Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) AT4G13160 110 / 1e-26 Protein of unknown function, DUF593 (.1) AT1G04890 109 / 2e-25 Protein of unknown function, DUF593 (.1) AT5G16720 82 / 6e-16 Protein of unknown function, DUF593 (.1) AT1G70750 75 / 1e-13 Protein of unknown function, DUF593 (.1) AT3G54740 63 / 4e-10 Protein of unknown function, DUF593 (.1.2) AT1G18990 63 / 6e-10 Protein of unknown function, DUF593 (.1) AT1G08800 63 / 9e-10 Protein of unknown function, DUF593 (.1.2) AT2G30690 61 / 3e-09 Protein of unknown function, DUF593 (.1) AT5G06560 60 / 4e-09 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242900 [exp] 239 / 2e-68 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 71 / 3e-12 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.004G087600 [exp] 70 / 6e-12 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.019G007802 [exp] 69 / 9e-12 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 69 / 1e-11 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 68 / 2e-11 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 67 / 4e-11 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 67 / 4e-11 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 66 / 6e-11 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016673 [exp] 261 / 7e-77 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10007129 [exp] 253 / 6e-74 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10022791 [exp] 107 / 5e-24 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2) Lus10011854 [exp] 107 / 7e-24 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 86 / 9e-17 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 74 / 2e-13 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 69 / 1e-11 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 67 / 2e-11 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 67 / 3e-11 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 66 / 5e-11 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.017G055100.1 pacid=42814608 polypeptide=Potri.017G055100.1.p locus=Potri.017G055100 ID=Potri.017G055100.1.v4.1 annot-version=v4.1 ATGCCTTGTCAAGAGATAAAGTCATGGGCTTTTGATGAACTAGTTGGTGCATATCTTGATCTTGCTATTGCATATTTTCTGTTATGTGCATCGACTTTTG CTTTTTTCGCCGAGAAATTTCTGGGTTTATTTAGATTGTGTTTGCCATGCCCCTGTAATGGACTTTTTGGTGATCACAATAGAAATAAGTGCTGGCGAAG AGTGTTAGCTGATAGACCATCAGAGAATATATCTTCTGTTCAGTTCTCTGTTAAGAGTAGGTTCCCTTTTGATTCTATGTGGGACAAACACTTGAATTTT GAGTCGAGTGTTGGGACGATAAACGAAGTAAATTGTGGAAGTGACAATGCTGGATTAGAAGGCGAAGCCTGGTGTGGCTCACTTAGGGAGAGGAAGAGTG GAAAGGGAGTTGAGAGATCTGTAGTCAATGTGAGGGATGTGAAAGAAGGGAAGTTTGATGTTAAAGAGAGGGGGTTTTCAATCCAGAAGGGGAGATATCT TAGGAGACGCAGAAAAGTGGCTGCTGATAAAGGGCTGTTTTCTTCTGTTTCGTCATATGATCATTCACAGTCAAATTCTCGAACTCATCCTCAATCTCCA GCCAGTGTCAATAAATTGATGAATAAGCATCATGAAGGTGACATGGTTCCTGCTAGTTCTGGTGCTGATGCTCTGCATTTTGAGGATAGCAAGGAGTCTT CAGTGGATACTGGATTTGTGGGAACAGTCTCTAATGATTTTGAATCAAATGAACCTCTTGGTGAAAATAAGCCCATGGAAAAGGCTGCACCGCTTGGTGA TGATTTGAAATGCAAAGCACAAGGAGAGCCTTGCTTTGATGGTGAAGAAAAACATGGTATTAGAGTCTTGGAACAAGCATCAGAAGAAGAACACGCTGCT TTTTCAGCTTTGTACCTGGAGCTCGAGAAAGAGAGAAGTGCTGCTGCTTCTGCAGCAGACGAGGCCATGGCTATGATTCTGCGTCTCCAAGAAGATAAGG CATTGATAGAAATGGAAGCTAGGCAATACCATAGGATGATTGAGGAAAAGTCTGCTTATGATCTTGAAGAAATGAACATTCTCAAAGAGATCCTCCTAAG GAGAGAGAGGGAGAAGCATTTCTTGGAGAAGGAAGTTGAAACTTACAGGCAAGTGATTTTTGGGAATGAGGAGTGGGAATCTGATGTGCAAGACATAGGA ACCACGCATGAACAAATGGCTTCTTCGCAATATTCACGTGAGGATCCATTTCTGGTGCTGCAGAGGATTAGTGAATCCATTGACGAGAAAGAGAAGGGAG AAGAGTCAAACAAATTTTTAAGATCCAAGGTTCAATCCATTGAATCACAAAGTTGTGCTCTTGCTTTTGGGAAAGAATTACCAATTCCAGAGTTGGATGA AGTTGAATCTTTGAAAGGACGGTGCATTCATAGGCACCCAGGCATTGACAAACTTCGCCGACATTTATCAATGGACAATGATGGGACTCAAGAGGAATTT GAAGAGAAAGAACTGCTATCACCTGACAATAGTCTATTTGATCAACTAAGAGAGCCACAAATTATGGAGTCATGCTCACAATTTGACTTGTCAACTCGGG GTTGTAATTTGAATGAGAAAACCATTTCTACATCCGTGGAAGCACAGCAGCAAAGTGATCAAAGTGATTGCATTAATGCAGGTCACGGGTTGGCGTCAAA GACAACAGAGACTTGTGACCAAACTAAGATTATTTTCCCGTATAATTGTGATGATTCAGAGAAGCATGCAAGAGATTCATCTGATGCAGAATTTGATTTG GGTTCCCTTGTTCATGATGTTCATGTCATTGATGATAAAACCAATTTGTCTTGTGGAATTAATGAAAATGGAAGTGAAAAGTTGTCCGTGAGTGCTGCGT CAGACATCCCAAGAACTTGTGGCAGTCCAAGGATAAGTTGGGCTGAGCAAGATGTCCGCAAAAGCTGTTCTGATATGACTAATGGATTGCCGCCATTGGG TAGCTCAAAAGGAAAATTCTTGACTTCTGATTTGAGAAGAAATTCCATGTCTGCAGTTGATTATGAAAGATTTAAAATTGACAGTGAAGTTGGGTGGCTG AGAGAGAGGCTACGAATCATTCAAGTGGGAAGAGAACAGCTCAATATCTCTATGGAGAACAGGGAAAAGAAAAAGGTCCAGTTGCAACTTTTGGAGAATA CAGTGAGTCAGCTTCGAGAGATTCAGCAATCAACAGAGCATGGAAAGGCTGTTCGTCAGGCTTCACTGCCCCCTCTTTCGTATAAGGTCATGTCGAAGAA AAGGCAGTGGCGAAGTGCTTCTTTGGGAGTGCATAGGAGCACTTAA
AA sequence Show only first row Show all	>Potri.017G055100.1 pacid=42814608 polypeptide=Potri.017G055100.1.p locus=Potri.017G055100 ID=Potri.017G055100.1.v4.1 annot-version=v4.1 MPCQEIKSWAFDELVGAYLDLAIAYFLLCASTFAFFAEKFLGLFRLCLPCPCNGLFGDHNRNKCWRRVLADRPSENISSVQFSVKSRFPFDSMWDKHLNF ESSVGTINEVNCGSDNAGLEGEAWCGSLRERKSGKGVERSVVNVRDVKEGKFDVKERGFSIQKGRYLRRRRKVAADKGLFSSVSSYDHSQSNSRTHPQSP ASVNKLMNKHHEGDMVPASSGADALHFEDSKESSVDTGFVGTVSNDFESNEPLGENKPMEKAAPLGDDLKCKAQGEPCFDGEEKHGIRVLEQASEEEHAA FSALYLELEKERSAAASAADEAMAMILRLQEDKALIEMEARQYHRMIEEKSAYDLEEMNILKEILLRREREKHFLEKEVETYRQVIFGNEEWESDVQDIG TTHEQMASSQYSREDPFLVLQRISESIDEKEKGEESNKFLRSKVQSIESQSCALAFGKELPIPELDEVESLKGRCIHRHPGIDKLRRHLSMDNDGTQEEF EEKELLSPDNSLFDQLREPQIMESCSQFDLSTRGCNLNEKTISTSVEAQQQSDQSDCINAGHGLASKTTETCDQTKIIFPYNCDDSEKHARDSSDAEFDL GSLVHDVHVIDDKTNLSCGINENGSEKLSVSAASDIPRTCGSPRISWAEQDVRKSCSDMTNGLPPLGSSKGKFLTSDLRRNSMSAVDYERFKIDSEVGWL RERLRIIQVGREQLNISMENREKKKVQLQLLENTVSQLREIQQSTEHGKAVRQASLPPLSYKVMSKKRQWRSASLGVHRST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	1.41	0.9423	Pt-RGA.54
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	1.41	0.9360	Pt-ATCNGC19.3
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	1.73	0.9326
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	2.00	0.9279
AT5G20110			Dynein light chain type 1 fami...		Potri.015G067800 [exp]	2.82	0.9180
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	3.16	0.9278
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	3.74	0.9191
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	4.24	0.9127
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	5.29	0.9067
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	5.65	0.9037

Compare expression of checked genes

Potri.017G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.