Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04880 363 / 8e-122 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G76110 242 / 2e-76 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 204 / 8e-62 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 173 / 8e-50 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT4G11080 45 / 7e-05 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315200 [exp] 620 / 0 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 237 / 2e-74 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 230 / 6e-72 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G093700 [exp] 44 / 0.0002 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007127 [exp] 444 / 3e-153 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 431 / 3e-148 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 233 / 7e-73 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 152 / 3e-42 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10023091 [exp] 48 / 7e-06 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 48 / 1e-05 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 45 / 0.0001 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G055200.1 pacid=42813205 polypeptide=Potri.017G055200.1.p locus=Potri.017G055200 ID=Potri.017G055200.1.v4.1 annot-version=v4.1 ATGGAGTTGGCGATGGCATCGACTTCTTGTGCCAAGCAGAGTCCAACGCTTATGAAAGAACCAGTTATGAACTATGTTCAATATCCAGCACCTGGGGCCA CATATGAGGATGTTATAGTTAGTCCTAAACTCTTTATGGAAACTTTGGAGAAGTTCCATGCTGCCATGGGAACCAAGTTCATGATCCCTATAATAGGGGG TAAGGAACTGAACTTGCATCGGCTTTTTGTGGAGGTAACATCTCGAGGTGGCATCGAGAAGATTATTAGAGAGAGAAGATGGAAAGAAGTGACTGGTGTT TTCAACTTTCCATCTACTGCCACAAATGCATCTTTTGTGCTGCGCAAGTACTATGGTTCCTTGCTTCAACATTATGAACAACTTTACTACTTCAAAGCAC GGAGTTGGAGCCCTGCCTCTCCTGTTCCTTTGCAGAGTTCATCGATATCACAATGTCCAGCTCAAGTGACTGTTCAGCCATCACCAGAATACCAAGCTGC TGCAGTCAAACAACAAACAGCAAACATTCCAGAGCTGTGTAGAGCAATGCCAGGATCATCTGCAAGCACTTCAGTGATAGGGGTAATTGATGGGAAATTC GAGAGTGGGTATCTTGTTACTGTGACGGTAGGTTCAGAGAAACTCAAAGGTGTTCTTTATCAGGCGCCGCAGAACCAATCATGGCAAGTGCCACAGCCTT GTAGTGTGCCTGCCAACAATAGTGTTAATACACAAGCTGTACCAGGTACACGCCGCCGGCGCCGCCGAAAGAAAAGTGAGATAAAAAGAAGGGACCCTGC TCATCCAAAACCTAATAGAAGTGGCTATAATTTCTTCTTTGCTGAGCAGCATGCAAGACTCAAACCACTTTACCCGGGGAAGGATAGAGAGATCAGTAGG ATGATTGGTGAGCTATGGAACAAAATAAATGATTCCCAAAAAGCGGTTTATCAGGATAAAGCTCTTAAAGATAAAGAAAGATACAAAATAGAAATGGAGG GTTATCGGGAGAGATTGAGAACGGGGAAAGTTATTAGTGATGCGGTTCCACTGCAGCAGTGGTTACCAGGTAAAGATACTGAGATGGTGGAAGTGAATGT TAGTACTGGAGAAACTGGAGGGGGCTCTCCTCAAAATGATAGTAGTTCTGGTGAAAGTGATTCTGAAGATAAAACTGCAGAGAAAGATTTGGACATGGAA GCATCTCCACTTGAGGGATTGGGTGCTGATTCTGGCGACATGGATGTGGAGACTTCAGCTGAGGTAACACCTTTTAAGCTACTATCTAAGAGGGAAGAAA ATGTTAAAGATGAGGGGGTTGAAAAGCCTGGCAACCCAGCCACTGAAAACTCGGAGACTACTGTACAGACTCTGGAAGAAAACATACATGGTGGCAAACA TTGA
AA sequence Show only first row Show all	>Potri.017G055200.1 pacid=42813205 polypeptide=Potri.017G055200.1.p locus=Potri.017G055200 ID=Potri.017G055200.1.v4.1 annot-version=v4.1 MELAMASTSCAKQSPTLMKEPVMNYVQYPAPGATYEDVIVSPKLFMETLEKFHAAMGTKFMIPIIGGKELNLHRLFVEVTSRGGIEKIIRERRWKEVTGV FNFPSTATNASFVLRKYYGSLLQHYEQLYYFKARSWSPASPVPLQSSSISQCPAQVTVQPSPEYQAAAVKQQTANIPELCRAMPGSSASTSVIGVIDGKF ESGYLVTVTVGSEKLKGVLYQAPQNQSWQVPQPCSVPANNSVNTQAVPGTRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISR MIGELWNKINDSQKAVYQDKALKDKERYKIEMEGYRERLRTGKVISDAVPLQQWLPGKDTEMVEVNVSTGETGGGSPQNDSSSGESDSEDKTAEKDLDME ASPLEGLGADSGDMDVETSAEVTPFKLLSKREENVKDEGVEKPGNPATENSETTVQTLEENIHGGKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	0	1
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	1.41	0.9453
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	1.41	0.9553
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.010G125100 [exp]	2.82	0.9316	COL6.3
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	4.24	0.9361
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	4.24	0.9238
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	5.47	0.9011
AT1G60010			unknown protein		Potri.008G146500 [exp]	5.83	0.8989
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	8.94	0.9125
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	10.67	0.8722
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	12.40	0.9185

Compare expression of checked genes

Potri.017G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.