Plant FIBer expression Database

Potri.017G055501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24100 42 / 7e-07 Uncharacterised protein family SERF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G056600
[exp]
42 / 5e-07 AT3G24100 38 / 4e-05 Uncharacterised protein family SERF (.1)
Potri.001G315400
[exp]
40 / 5e-06 AT3G24100 / Uncharacterised protein family SERF (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04419 4F5 4F5 protein related disordered region
Representative CDS sequence
>Potri.017G055501.1 pacid=42813507 polypeptide=Potri.017G055501.1.p locus=Potri.017G055501 ID=Potri.017G055501.1.v4.1 annot-version=v4.1
ATGGCTCGCGGAAATCAAAGAGAGAAAGATCGTGAGAGAGCTCAAGCTCGTAACGGTGGCAAAGGAAAAAATAAAGACGATGGTTTGACTCCTGAACAGC
GTCGTGAAAGAGACGCCAAAGCGCTGCAAGAAAAGACGGCCAAGAAGGCAGCACAGGCAGCGGGAGGGGAATCCTCGGGCGGAGATAAAGGGAATAATAA
GAAATAA
AA sequence
>Potri.017G055501.1 pacid=42813507 polypeptide=Potri.017G055501.1.p locus=Potri.017G055501 ID=Potri.017G055501.1.v4.1 annot-version=v4.1
MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSGGDKGNNKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24100 Uncharacterised protein family... Potri.017G055501
[exp]
0 1
AT4G01370 ATMPK4 MAP kinase 4 (.1) Potri.002G162500
[exp]
14.56 0.6527 MPK4.1
AT4G13110 BSD domain-containing protein ... Potri.008G199000
[exp]
23.32 0.6255
AT4G29160 SNF7.1 SNF7 family protein (.1.2.3) Potri.006G154000
[exp]
25.88 0.5970
AT1G16210 unknown protein Potri.009G140200
[exp]
28.77 0.6216
AT3G66654 Cyclophilin-like peptidyl-prol... Potri.010G144500
[exp]
30.98 0.6066
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Potri.003G067100
[exp]
34.04 0.6213
AT3G51100 unknown protein Potri.005G117400
[exp]
34.30 0.5711
AT5G02050 Mitochondrial glycoprotein fam... Potri.004G049600
[exp]
39.68 0.6202 Pt-SDH4.4
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Potri.006G258300
[exp]
57.84 0.6297
AT2G33585 unknown protein Potri.005G257100
[exp]
65.81 0.5660

Potri.017G055501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.