Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 523 / 3e-170 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 342 / 5e-101 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G32850 89 / 9e-18 UBP11 ubiquitin-specific protease 11 (.1) AT5G22030 84 / 2e-16 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G24640 83 / 4e-16 UBP19 ubiquitin-specific protease 19 (.1.2) AT2G40930 83 / 5e-16 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 82 / 1e-15 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 82 / 2e-15 UBP10 ubiquitin-specific protease 10 (.1.2) AT4G31670 77 / 2e-14 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 75 / 1e-13 UBP21 ubiquitin-specific protease 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315600 [exp] 1586 / 0 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.016G031900 [exp] 96 / 6e-20 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 92 / 1e-18 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.018G009500 [exp] 84 / 3e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G152500 [exp] 83 / 7e-16 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G270600 [exp] 82 / 1e-15 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 81 / 3e-15 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 81 / 4e-15 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.001G449000 [exp] 80 / 8e-15 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016664 [exp] 869 / 0 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10016663 [exp] 845 / 0 AT1G04860 392 / 4e-120 ubiquitin-specific protease 2 (.1) Lus10007120 [exp] 678 / 0 AT1G04860 521 / 1e-172 ubiquitin-specific protease 2 (.1) Lus10007121 [exp] 153 / 2e-42 AT1G04860 125 / 2e-33 ubiquitin-specific protease 2 (.1) Lus10033243 [exp] 87 / 6e-17 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 85 / 2e-16 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 84 / 3e-16 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 84 / 4e-16 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10013369 [exp] 84 / 5e-16 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10009273 [exp] 84 / 6e-16 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G055600.1 pacid=42812897 polypeptide=Potri.017G055600.1.p locus=Potri.017G055600 ID=Potri.017G055600.1.v4.1 annot-version=v4.1 ATGGGGAAAAGGGCTAATAAGAAAAAGGCTCGCCCACCGCAGAAGGAGAAGCGGGTCGCTGGCCATTCTCCCAATATTGTGCCTGAACAAGCAAATCCCA ATGTTGAAATTGTTGACGGAGTTACAGCAGTGAAAGAGAGAAAATTGTGTTCTCACTTTGACAAGGGTTTTGATGCGAACAAATTGTCGGACAAAATTAG GTCTTTGGATTCTCTTAGGTGTGAGGATTGTCGAGAAGGTGTTGGTGATAGGAAGGGGGCTAAGGGAAGGGGTAAACAAGCTAAGAAGAAAGGAAGTGGT TCGGTTGATTCAAAATCCCAGTCGAAAGCCATTTGGGTCTGTTTAGAATGTGGGCATTTAGCCTGTGGAGGGGTTGGTTTGCCAACGACTGCTCAGAGCC ATGCAGTTCGTCATTCCAAGCAGAGTCGTCATCCTTTGGTCTTCCAATGGGAAAACCCTCAACTTCAATGGTGCTTCCCATGTAATACACTAATTCCAGT TGAGAAAACAGAGGGAAATGGTGAGAAAAAAGATTCAGTATTTGAGGTTGTAAAGACGATCAAGGCGCAATCATTTGAACAGTCATCAGTGGATGCCGTG GATGTTTGGATTGGAAGAGGCAGTATTCTTAGTGAACTTAATGCAGAAGGCACTGAGGCAACTAGTTCAGAGGGAAGAAGTGGTCATGTGGTGAGAGGCT TGGTTAATCTTGGGAACACTTGCTTCTTTAATTCAGTCATGCAGAATCTTCTATCTATGAACAAGTTGCGTGACTACTTAAATGAAGAGGCATCTCTTGG GCCTTTATCAATTGCTTTAAAGAAGCTATTTACTGATCTACAAGCTGAGGCCAGTTTAAGAAATGTAATCAATCCGAAATCTTTTTTTGGGTCGGTCTGT TCCAAGGCTCCCCAGTTTAGGGGTTATCAGCAGCAAGATAGTCATGAATTGCTGTGCTGCTTACTTGACGGGCTTTCTACTGAAGAGTTGATTGTTAGAA AGCGAAGAAATGCTTCCAAGGAAGATGGCATTCCTCCAAAACATGGTCCTACGTTTGTGGATTCTGCTTTTGGGGGTCGAATTTCTAGCACTGTTTGTTG TGTAGAATGTGGGCACTCCTCAATAATGCATGAGCCATTTCTAGATCTCTCACTTCCAGTTCCAATGAAGAAACCTCCAATTAAAAAAGTCCAACCTGTC TCTCGAGCAAAGAAAACAAAGCTGCCACCAAAGAGAGGGGGGAAGGTTCAACCAAAGGTTAACAAAAATATGGATTCAGTGCCAGCTCAAAATATATCAA ACCCATCAGTCCATAGTGAGTCTTCATGCCAAACACAATCTTCTTCAGATAACACTCTAGCACCAGATTCAACTGTTCCATCGACTGCGGTCAGTGAAAG TGGCATAGCTTCACAGAATTCGATGGCTGGTATTGAATCTGATAGTAAGCAAGCTGTTGAGACAACAATGGAGCAAACAGCAAGTTCATTTGAAGACTTC TGGATGGATTATGTCGGACCGGAAACTACATCAGATGAGCATGATCTTACTTCAGAAAATAATGATCTTGCAGCAGGTTGGCAATGCGGGGACAAATTTG ACATTCCTAATGATGGCTTAATGGAGACTTGCCAGGCATCTTCAATTGATGGGGAGCCAAATCAAAAACCAGAATCTTCTTCTGTTAATCCTTGGGAAGA GGAGGTTCCATTTCAAGTTCAAAGCTCTGAAGTTCTTCTGCTTCCGTACAGAGAAGAGGGCTATACTGATGGGGAGATAATGAAAGGAGAAGCTGAGGCT TCCTCATCGTTTGTGGGCTGCGAACAAGATGAAGCGGAATTTGATGGCATTGGTGACTTATTCAATGAGCCTGAGGTTTCGGCAGCTCCTGTTGCAGGGC CCTCTTTACCTAATGAAGTTGCTGGACCAGTTTTTATCGCAGGAATTGGCAGTGAGTCTGATCCTGATGAAGTTGACGATACTGATTCTCCAGTGTCTAT AGAGAGTTGTTTGTCTCATTTTGTAAAGCCAGAACTTCTCTCCAATGATAATGCTTGGGAATGTGAGAACTGTTCAAAAATCCTGCAACAGCAAAGGTTG GATGCAAAGAAGAAGCAAGCTAAAATATCTTCAAAAACTTTATTAAATGGAGGTGAGACACAAATACAAAGTGATTCAGTGAGTTTATACAAGGACATCT CATATGCCTCTGAGGTCAGAAACTTTCAGAATGGAGATGGTATCCCTAATAACCTTCTCAACTCCACACCTGAAGTCTTTGATTCAGGTAATGATTCCTC AAATAAAAAATTCATACAAGCTGAAATTGTTCAGACAGAGATGGAACCGTTTATTTCTCAAAGTGAAGAGAGGAAATATGAGATGAATGTTTCACATAGC TCCGGTTACTATGAATCATGTAATGGAGAAACTTTGAGTGGTCCACCTGTTGATTCTTGTAGTGTTGATGAGACAAGGGGTACTGGATATACCATGGCTA AAGATGAGCAGACTGGCTCCAACTTCTCTGGAACCTGTGAGTCAGATGTGAATGAGGATGAGGATAAAACTTCAAAAAAACTGAATGTAAAGAGGGATGC AACTAAGAGGGTCCTTATTGATAAAGCACCGCCGATTCTAACCATTCATTTGAAGAGGTTCAGTCAAGATGCTCGTGGTCGTTTATGTAAATTGAGCGGC CATGTTACCTTCCGAGATGTACTTGATCTTGGACCTTATATGGATCCCAGGTGTGTTGACACAGAGAGATATGTATATCGCCTGCTCGGGGTGGTAGAGC ATTTAGGAACAATGAGGGGAGGCCACTATATTGCATATGTCAGAGGAGATGAGAGGAACAAAGGCAAGGCTGACAAGGAACAGGGGGGTTCTGTGTGGTA TTATGCCAGTGACGCCCATGTGCGTGAGGTTTCTCTGGAAGAAGTTCTGCGTTGCGATGCTTATTTATTATTTTATGAGAAAGTATCAAATTGA
AA sequence Show only first row Show all	>Potri.017G055600.1 pacid=42812897 polypeptide=Potri.017G055600.1.p locus=Potri.017G055600 ID=Potri.017G055600.1.v4.1 annot-version=v4.1 MGKRANKKKARPPQKEKRVAGHSPNIVPEQANPNVEIVDGVTAVKERKLCSHFDKGFDANKLSDKIRSLDSLRCEDCREGVGDRKGAKGRGKQAKKKGSG SVDSKSQSKAIWVCLECGHLACGGVGLPTTAQSHAVRHSKQSRHPLVFQWENPQLQWCFPCNTLIPVEKTEGNGEKKDSVFEVVKTIKAQSFEQSSVDAV DVWIGRGSILSELNAEGTEATSSEGRSGHVVRGLVNLGNTCFFNSVMQNLLSMNKLRDYLNEEASLGPLSIALKKLFTDLQAEASLRNVINPKSFFGSVC SKAPQFRGYQQQDSHELLCCLLDGLSTEELIVRKRRNASKEDGIPPKHGPTFVDSAFGGRISSTVCCVECGHSSIMHEPFLDLSLPVPMKKPPIKKVQPV SRAKKTKLPPKRGGKVQPKVNKNMDSVPAQNISNPSVHSESSCQTQSSSDNTLAPDSTVPSTAVSESGIASQNSMAGIESDSKQAVETTMEQTASSFEDF WMDYVGPETTSDEHDLTSENNDLAAGWQCGDKFDIPNDGLMETCQASSIDGEPNQKPESSSVNPWEEEVPFQVQSSEVLLLPYREEGYTDGEIMKGEAEA SSSFVGCEQDEAEFDGIGDLFNEPEVSAAPVAGPSLPNEVAGPVFIAGIGSESDPDEVDDTDSPVSIESCLSHFVKPELLSNDNAWECENCSKILQQQRL DAKKKQAKISSKTLLNGGETQIQSDSVSLYKDISYASEVRNFQNGDGIPNNLLNSTPEVFDSGNDSSNKKFIQAEIVQTEMEPFISQSEERKYEMNVSHS SGYYESCNGETLSGPPVDSCSVDETRGTGYTMAKDEQTGSNFSGTCESDVNEDEDKTSKKLNVKRDATKRVLIDKAPPILTIHLKRFSQDARGRLCKLSG HVTFRDVLDLGPYMDPRCVDTERYVYRLLGVVEHLGTMRGGHYIAYVRGDERNKGKADKEQGGSVWYYASDAHVREVSLEEVLRCDAYLLFYEKVSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Potri.017G055600 [exp]	0	1	Pt-UBP2.1
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Potri.010G140700 [exp]	7.07	0.7963
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	12.92	0.8186
AT2G38820			Protein of unknown function (D...		Potri.007G109700 [exp]	15.81	0.7818
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Potri.010G129000 [exp]	17.72	0.8068
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	22.49	0.7831
					Potri.005G150150 [exp]	44.86	0.7962
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G010800 [exp]	55.50	0.7958
					Potri.013G088025 [exp]	57.48	0.7906
AT2G32235			unknown protein		Potri.018G147100 [exp]	58.14	0.7845
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.013G107950 [exp]	61.48	0.6969

Compare expression of checked genes

Potri.017G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.