Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 678 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 571 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 453 / 5e-156 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 260 / 3e-81 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 252 / 5e-78 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 245 / 2e-75 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52780 243 / 1e-74 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT1G56360 219 / 2e-65 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G16430 209 / 2e-61 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 207 / 8e-61 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055900 [exp] 739 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 712 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 575 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.003G030700 [exp] 244 / 4e-75 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.011G138200 [exp] 233 / 1e-70 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 232 / 2e-70 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.004G160100 [exp] 222 / 6e-66 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 217 / 4e-64 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 215 / 9e-64 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016665 [exp] 762 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10011847 [exp] 717 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 714 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 711 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 576 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007119 [exp] 416 / 7e-143 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10021376 [exp] 250 / 6e-78 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 250 / 3e-77 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 248 / 2e-76 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10019625 [exp] 247 / 4e-76 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G055800.2 pacid=42813075 polypeptide=Potri.017G055800.2.p locus=Potri.017G055800 ID=Potri.017G055800.2.v4.1 annot-version=v4.1 ATGGGTTTACTCTCATTTCTCACATTTCCACTATTTCTCTCACTTTTATGGAGATTAATAATTGTTAATGGTAATTTTTCAACGACCCTTGAGGGACCAT TCAAGCCAGTAACGGTTCCTTTTGATAACAAGACTTACCATGGCAATGCCATTGACTTGCCAGACACTGACCCTCAAGTTCAAAGGACTGTTCAGGGATT TGAACCTGAACAAGTCTCTGTCTCCCTGTCTTCTGACTATGACTCTGTTTGGATCTCTTGGATTACAGGGGATTCCCAAATTGGTGGTGACATAACACCT TTGGATCCTGAATCAGTTTATAGCGTTGTACACTATGGAATTGAAGGGTCCCAGATGAGTTATGAGGAAGTTGGATATTCATTTGTTTACAATCAACTTT ATCCTTTTGAAGGGCTTCAAAACTACACTTCTGGCATCATACACCACGTTCGTCTGACAGGGTTGGAACCAAGCACATTATATCAATATCAATGTGGAGA TCCCTATATATCAGCAATGAGTGATGTCTTTTATTTTAGGACTATGCCCCCCTCCAGTCCTACAAATTACCCTCGTCGAGTAGCAGTGGTAGGAGACCTA GGTCTTACATACAATACAAGCACAACATTCAGTCATTTACTCAGCAACCATCCAGATCTTCTTGTTTTGGTTGGAGGTATAAGTTATGCTGACATGTATC TCACTAATGGAACTGGATCCGATTGTTACCCTTGCTCATTTGATGAATCTCCCATCCATGAAACATACCAGCCTCGATGGGATTATTGGGGAAGGTTTAT GCAACCTCTAGTAGCTAATGTTCCAACTATGTTGGTTGGAGGGAAGCATGAGATAGAACCACAGGCTGAAGATCAGATTTTCGTTTCTTACAGCTCTCGA TTTGTGTTCCCATCTGAAGAAAGCGGATCATCATCCTCGGTGTACTATTCTTTCAATGCAGGAGGGATACACTTTGTGATACTAAATCCCTACACTTACT ATGACAAATCATCGGATCAATACAAGTGGTTGGAAGGAGATCTGTATAATGTTAACAGGAATGTGACTCCATGGTTGGTGGCTGTTTGGTATCCTCCTTG GTACAGCACATTCAAGGCACAATACAGAGAAGCAGAATGTATGAGAGTAGAAATGGAGGACTTGCTCTATGAGCATGGTGTGGACATAGTATTCAATGGA CATGTTCATGCATACGAGAGGTCAAACCGAGTTTATAACTACTCTTTGGATCCATGTGGTCCAGTTTATATCACAATTGGTGATGGTGGAAGTCGAGAAG ACATAGCAGTTACCCATGCTGACGACCCTGATGAGTGTCCAGAGCCATCCACCACAGCTGACTTAGATATAGGTGGTGGCTTCTGTGGATTCAATTTCAC ATCAGGCCCTGCTGCAGGTAGCTTTTGCTGGAACAGGCAGCCTGAGTATAGTGCCTACAGAGAAAGCAGCTTTGGTCATGGGATATTAGAGGTGAAAAAT GTGACTCATGCTTTGTGGAGTTGGCATCGCAATCGAGACTACTATGAAACTGCTGGGGATATCCTTTACATAGTTAGAGAACCTGATAGGTGCCTGGCTA ACCAAGGTAATTAA
AA sequence Show only first row Show all	>Potri.017G055800.2 pacid=42813075 polypeptide=Potri.017G055800.2.p locus=Potri.017G055800 ID=Potri.017G055800.2.v4.1 annot-version=v4.1 MGLLSFLTFPLFLSLLWRLIIVNGNFSTTLEGPFKPVTVPFDNKTYHGNAIDLPDTDPQVQRTVQGFEPEQVSVSLSSDYDSVWISWITGDSQIGGDITP LDPESVYSVVHYGIEGSQMSYEEVGYSFVYNQLYPFEGLQNYTSGIIHHVRLTGLEPSTLYQYQCGDPYISAMSDVFYFRTMPPSSPTNYPRRVAVVGDL GLTYNTSTTFSHLLSNHPDLLVLVGGISYADMYLTNGTGSDCYPCSFDESPIHETYQPRWDYWGRFMQPLVANVPTMLVGGKHEIEPQAEDQIFVSYSSR FVFPSEESGSSSSVYYSFNAGGIHFVILNPYTYYDKSSDQYKWLEGDLYNVNRNVTPWLVAVWYPPWYSTFKAQYREAECMRVEMEDLLYEHGVDIVFNG HVHAYERSNRVYNYSLDPCGPVYITIGDGGSREDIAVTHADDPDECPEPSTTADLDIGGGFCGFNFTSGPAAGSFCWNRQPEYSAYRESSFGHGILEVKN VTHALWSWHRNRDYYETAGDILYIVREPDRCLANQGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.017G055800 [exp]	0	1
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.008G057500 [exp]	1.41	0.7796
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	10.77	0.7355
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	12.24	0.7007
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.002G191100 [exp]	18.41	0.7465
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	19.05	0.7121
AT2G23240		AtMT4b	Arabidopsis thaliana metalloth...		Potri.009G167700 [exp]	22.22	0.6951
AT3G10080			RmlC-like cupins superfamily p...		Potri.008G020800 [exp]	24.18	0.6666
AT4G35240			Protein of unknown function (D...		Potri.002G011700 [exp]	28.37	0.6895
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G049700 [exp]	31.78	0.7351
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	34.40	0.7287

Compare expression of checked genes

Potri.017G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.