Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 816 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 608 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 540 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 310 / 3e-100 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 295 / 1e-94 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 293 / 8e-94 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 288 / 9e-92 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT2G16430 249 / 2e-76 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 233 / 2e-70 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT5G34850 230 / 3e-69 ATPAP26, PAP26 purple acid phosphatase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243900 [exp] 871 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 763 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 675 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.001G423700 [exp] 286 / 3e-91 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 285 / 7e-91 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 279 / 2e-88 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.004G160100 [exp] 246 / 3e-75 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 246 / 4e-75 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 243 / 5e-74 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016667 [exp] 905 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10011847 [exp] 854 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 853 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 730 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 660 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007119 [exp] 395 / 5e-135 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10021376 [exp] 305 / 2e-99 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017056 [exp] 301 / 8e-97 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 295 / 2e-94 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 293 / 2e-93 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C
Representative CDS sequence Show only first row Show all	>Potri.017G055900.2 pacid=42814304 polypeptide=Potri.017G055900.2.p locus=Potri.017G055900 ID=Potri.017G055900.2.v4.1 annot-version=v4.1 ATGGGTTTGGTTTCAGTGCTACTGATCTCGTTTTGTGTTCTGTCTATAAGCATGATCGGCACTGATAATATTGTTGTTGGGATACCAACAACTCTTGATG GACCCTTTAAGCCAGTGACTGTCCCTCTTGATAAAACTTTTAGAGGACATGCTGTGGACTTGCCTGATACAGACCCTCGAGTGCAAAGGGTTGTTCAAGG TTTTGAGCCTGAACAGATTTCTGTGTCCCTCTCTACTACTCATGACTCTGTTTGGATTTCTTGGATTACAGGGGATTTTCAAATTGGGGATAGAATAAAA CCATTGAATCCTAAAACTGTTGCTAGTGTTGTTCGATATGGAAGGTTAAGAATTCCACTTATTCACAAAGCTACTGGTTATTCCCTTGTTTACAACCAGT TGTATCCTTTCGTAGGCCTCCAGAACTACACTTCTGGGATCATACACCATGTCCGTCTTACAGGGTTAAAACCCAACACACTTTATCATTATCAATGTGG AGATCCTTCAATACCAGCAATGAGCAGTACATATTACTTTAAGACTATGCCGGCTTCAGGCCCCAAGAGTTACCCCAGCAGAATAGCAATAGTGGGGGAC CTAGGTCTTACGTACAATACAACCTCAACAGTTGATCACGTGATTGGAAACAATCCTGATCTTATTTTACTGGTTGGAGATGTTTGTTATGCTAACTTGT ACCTTACCAATGGAACTGGGGCTGATTGCTACTCCTGCTCTTTTTCTCAGACTCCCATTCATGAAACCTATCAGCCTCGCTGGGATTACTGGGGAAGATA TATGCAGCCTGTGACATCTAAAATTCCAATAATGGTGGTAGAAGGAAACCATGAGATAGAAAAACAAGTTGAAAATCAGACATTTGTTGCTTATAGTTCT CGATTTGCGTTCCCATCCAAGGAAAGTGGATCATCCTCCACATTCTATTACTCTTTCAACGCTGGTGGGATACATTTCATAATGCTGGGTGGCTACATTG CCTACAACAAATCAGCGCATCAATACAAGTGGTTGAAGAAAGATCTTGCCAAGGTTGACAGAAAAGTGACCCCATGGTTGGTGGCTACCTGGCACCCTCC TTGGTACAGCACCTACAAGGCGCATTATAGAGAAGCAGAATGTATGAGGACAGCAATGGAAGATTTGCTTTATCAGTATGGTGTTGACATAATCTTTAAT GGCCATATACATGCCTACGAGAGGTCTAACCGGGTATACAACTACACTTTGGATCCTTGTGGTCCTGTTCATATCACCGTCGGTGATGGTGGAAACCGAG AGAAGATGGCCATTGCACATGCTGATGAACCCCGTAACTGTCCTGATCCATCCACTACACCAGATGAGTACATGGGCGGTTTCTGTGCATTCAATTTTAC ATCAGGACCAGCAGCTGGAAAATTCTGCTGGGACCGGCAGCCAGATTATAGCGCATACAGAGAAAGTAGCTTTGGTCATGGGATTTTTGAGGTAAAAAAT GAGACTCATGCTCTGTGGACATGGCACCGAAATCAGGACATGTACAATTCTCCTGGAGATCAGATTTACATAGTAAGGCAGCCTGAGAGGTGCCCAACTG AACCAAAGAAGGTTTCCCACAAGTGCTGA
AA sequence Show only first row Show all	>Potri.017G055900.2 pacid=42814304 polypeptide=Potri.017G055900.2.p locus=Potri.017G055900 ID=Potri.017G055900.2.v4.1 annot-version=v4.1 MGLVSVLLISFCVLSISMIGTDNIVVGIPTTLDGPFKPVTVPLDKTFRGHAVDLPDTDPRVQRVVQGFEPEQISVSLSTTHDSVWISWITGDFQIGDRIK PLNPKTVASVVRYGRLRIPLIHKATGYSLVYNQLYPFVGLQNYTSGIIHHVRLTGLKPNTLYHYQCGDPSIPAMSSTYYFKTMPASGPKSYPSRIAIVGD LGLTYNTTSTVDHVIGNNPDLILLVGDVCYANLYLTNGTGADCYSCSFSQTPIHETYQPRWDYWGRYMQPVTSKIPIMVVEGNHEIEKQVENQTFVAYSS RFAFPSKESGSSSTFYYSFNAGGIHFIMLGGYIAYNKSAHQYKWLKKDLAKVDRKVTPWLVATWHPPWYSTYKAHYREAECMRTAMEDLLYQYGVDIIFN GHIHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAIAHADEPRNCPDPSTTPDEYMGGFCAFNFTSGPAAGKFCWDRQPDYSAYRESSFGHGIFEVKN ETHALWTWHRNQDMYNSPGDQIYIVRQPERCPTEPKKVSHKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.017G055900 [exp]	0	1
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.006G026500 [exp]	8.12	0.7518
AT1G10800			unknown protein		Potri.014G147600 [exp]	15.87	0.7068
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	17.60	0.7068
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159801 [exp]	18.52	0.7038
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	18.57	0.7338
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018300 [exp]	20.00	0.6837
AT1G26820		RNS3	ribonuclease 3 (.1)		Potri.008G086800 [exp]	20.59	0.7010	S.4
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	21.21	0.6970
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.015G046300 [exp]	24.18	0.6120
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.014G156400 [exp]	24.81	0.6593	Pt-NFR1.2

Compare expression of checked genes

Potri.017G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.