Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25040 383 / 2e-137 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 332 / 4e-117 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) AT4G38790 124 / 1e-34 ER lumen protein retaining receptor family protein (.1) AT1G19970 122 / 8e-34 ER lumen protein retaining receptor family protein (.1) AT1G75760 120 / 3e-33 ER lumen protein retaining receptor family protein (.1) AT2G21190 119 / 6e-33 ER lumen protein retaining receptor family protein (.1) AT3G25160 114 / 7e-31 ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315800 [exp] 411 / 2e-148 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 301 / 4e-105 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 130 / 6e-37 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 129 / 1e-36 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 123 / 2e-34 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 113 / 2e-30 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022785 [exp] 393 / 4e-141 AT3G25040 382 / 9e-137 endoplasmic reticulum retention defective 2B (.1) Lus10011846 [exp] 376 / 1e-134 AT3G25040 364 / 7e-130 endoplasmic reticulum retention defective 2B (.1) Lus10043149 [exp] 352 / 5e-125 AT3G25040 332 / 2e-117 endoplasmic reticulum retention defective 2B (.1) Lus10029263 [exp] 268 / 1e-90 AT1G29330 337 / 7e-118 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007314 [exp] 156 / 5e-49 AT1G29330 179 / 2e-58 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 123 / 4e-34 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 120 / 4e-33 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 119 / 1e-32 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 117 / 4e-32 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10003146 [exp] 116 / 2e-31 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF00810 [poplar] [flax] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Potri.017G056000.1 pacid=42813121 polypeptide=Potri.017G056000.1.p locus=Potri.017G056000 ID=Potri.017G056000.1.v4.1 annot-version=v4.1 ATGAATATATTCAGATTAGCAGGGGACATGACCCATTTGGCTAGTGTCCTTGTTTTGCTCCTTAAGATCCATACTATCAAATCCTGTGCTGGTATTTCTC TAAAGACCCAGGAACTCTATGCTCTTGTTTTTGCCTCTCGCTACTTGGATATGTTCACCAGTTATGTCTCATTCTATAATACGGTGATGAAATTGATTTT CCTGGGAAGCTCATTCTCAATTGTTTGGTACATGCGACACCACAAGTTGGTTCGGAGATCTTATGATAAGGATCATGACACCTTTCGGCATTTTTTTATT GTGCTACCCTGCCTTATTTTGGCCTTGCTTATACATGAGAAATTTACCTTTATAGAGGTAATGTGGGCATTCTCCTTGTATCTGGAAGCAGTTGCCATAC TTCCTCAACTAGTCTTGTTGCAGAGGACAAGAAATATTGACAATCTGACGGGACAATATGTTTTTCTCCTTGGGGCATACAGAGCATTGTACATATTAAA CTGGGTTTTTCGCTTCTTCACAGAGCCACACTATGTCCACTGGATAACTTGGATATCAGGACTTGTTCAGACATTGTTGTATGCTGATTTCTTTTACTAT TATTTCCAGAGCTGGAAGAACAACGTGAAGCTGGAGTTGCCGGCCTGA
AA sequence Show only first row Show all	>Potri.017G056000.1 pacid=42813121 polypeptide=Potri.017G056000.1.p locus=Potri.017G056000 ID=Potri.017G056000.1.v4.1 annot-version=v4.1 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFASRYLDMFTSYVSFYNTVMKLIFLGSSFSIVWYMRHHKLVRRSYDKDHDTFRHFFI VLPCLILALLIHEKFTFIEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALYILNWVFRFFTEPHYVHWITWISGLVQTLLYADFFYY YFQSWKNNVKLELPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.017G056000 [exp]	0	1
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	2.00	0.9433
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	4.24	0.9276
AT4G12590			Protein of unknown function DU...		Potri.016G013100 [exp]	6.92	0.9159
AT4G11950			Protein of unknown function (D...		Potri.003G119400 [exp]	7.07	0.9239
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.018G096007 [exp]	9.16	0.9247
AT3G07480			2Fe-2S ferredoxin-like superfa...		Potri.014G177100 [exp]	10.95	0.9210
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Potri.001G061400 [exp]	11.74	0.9079
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	12.24	0.9275
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.001G171200 [exp]	12.36	0.9184
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	13.78	0.9181

Compare expression of checked genes

Potri.017G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.