Plant FIBer expression Database

Potri.017G056201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24190 43 / 0.0001 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
AT1G10450 43 / 0.0001 SNL6 SIN3-like 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G316300
[exp]
54 / 1e-08 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2)
Potri.001G350200
[exp]
45 / 2e-05 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08295 Sin3_corepress Sin3 family co-repressor
Representative CDS sequence
>Potri.017G056201.1 pacid=42814620 polypeptide=Potri.017G056201.1.p locus=Potri.017G056201 ID=Potri.017G056201.1.v4.1 annot-version=v4.1
ATGGAAGATATCAGGGATTTAAGAGATGAGTTCTCAGGGAGACTGAAAAACGTACCTGACCATGTCTTGGCAAGATTGAAGGCAACTCTTGAAGGTCACT
GTGACCTGATACATGGGTTCAACGTTTTCTTGCCGCCCTCGCATCGTTTTAGCGTTGTTGATGATGATGAAGACGATGACAGTGAGGCAGCAGAGGGACA
TAGTGATCTCTTCAGATGTATTGTTCCGCTGTGCGGAGACGATGCTGATTTACTGGAGTGTTTTTATAGAGTTATGCGAGCTTGTGAAGCACCTTCATCA
GTAGCATCTCGAAGTCCAGATTCTCGAGATAAAGATGTGAAAAACAGCGGAGCAGTACTAATTAAGGCCGGTGAAGAGCGGAAGAAGCAGCATCCTGAAA
AGATTGAGGTGGCTCAAGGGAACGATAAGGAAAGAAATTTTGTGAGAGGATTTGCAGTGAAACCAGGTGATCACGATCCAAGTACTTCTCCACTAGAAAT
TAAGAGCAATGAAAGTGAGAAAATCATGCTTGAATGTGAAGATAATAGATATGAGATGGACATGCTAATTAGTTGGTTTAGTTCAGCTGTTGAATATGCA
GAAGAATTGGAAAAGGGCATCGATGATAATGAAATGGAAAAGGGGAATCGGAATTTCTATGGTGTCTTGAACGTTTATATGGTGATCAGGGTCTTGAGGT
ACTTCACATACTAA
AA sequence
>Potri.017G056201.1 pacid=42814620 polypeptide=Potri.017G056201.1.p locus=Potri.017G056201 ID=Potri.017G056201.1.v4.1 annot-version=v4.1
MEDIRDLRDEFSGRLKNVPDHVLARLKATLEGHCDLIHGFNVFLPPSHRFSVVDDDEDDDSEAAEGHSDLFRCIVPLCGDDADLLECFYRVMRACEAPSS
VASRSPDSRDKDVKNSGAVLIKAGEERKKQHPEKIEVAQGNDKERNFVRGFAVKPGDHDPSTSPLEIKSNESEKIMLECEDNRYEMDMLISWFSSAVEYA
EELEKGIDDNEMEKGNRNFYGVLNVYMVIRVLRYFTY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24190 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMO... Potri.017G056201
[exp]
0 1
AT5G59100 Subtilisin-like serine endopep... Potri.009G037900
[exp]
2.44 0.9208
AT5G08391 Protein of unknown function (D... Potri.017G064301
[exp]
2.82 0.9429
Potri.003G089201
[exp]
3.46 0.8737
AT2G34580 unknown protein Potri.004G132600
[exp]
3.46 0.9110
AT4G19645 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.002G056600
[exp]
3.74 0.9092
AT5G17260 NAC ANAC086 NAC domain containing protein ... Potri.012G023900
[exp]
5.65 0.9062
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Potri.010G159300
[exp]
6.24 0.8717 GRF12.1
AT5G51720 2 iron, 2 sulfur cluster bindi... Potri.015G132500
[exp]
6.92 0.8517
AT4G24530 O-fucosyltransferase family pr... Potri.002G105800
[exp]
7.74 0.8326
AT1G47480 alpha/beta-Hydrolases superfam... Potri.004G143200
[exp]
8.48 0.8851

Potri.017G056201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.