Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07550 439 / 1e-153 RNI-like superfamily protein (.1.2) AT5G23340 117 / 3e-29 RNI-like superfamily protein (.1) AT4G15475 94 / 1e-20 F-box/RNI-like superfamily protein (.1) AT5G25350 83 / 5e-17 EBF2 EIN3-binding F box protein 2 (.1) AT3G58530 77 / 2e-15 RNI-like superfamily protein (.1) AT2G25490 77 / 4e-15 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT4G07400 76 / 7e-15 VFB3 VIER F-box proteine 3 (.1) AT5G27920 76 / 1e-14 F-box family protein (.1) AT1G21410 74 / 2e-14 SKP2A F-box/RNI-like superfamily protein (.1) AT3G50080 74 / 3e-14 VFB2 VIER F-box proteine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088800 [exp] 113 / 6e-28 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 87 / 2e-18 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.014G023500 [exp] 84 / 2e-17 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.005G141800 [exp] 83 / 4e-17 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.002G123100 [exp] 82 / 8e-17 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.013G013100 [exp] 81 / 2e-16 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 81 / 2e-16 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.007G048101 [exp] 77 / 4e-15 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.006G195800 [exp] 76 / 6e-15 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041087 [exp] 468 / 3e-165 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 459 / 6e-162 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10040998 [exp] 117 / 3e-29 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 116 / 8e-29 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 107 / 6e-25 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 88 / 2e-18 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002014 [exp] 87 / 2e-18 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 82 / 1e-16 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10018737 [exp] 81 / 2e-16 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10030102 [exp] 79 / 1e-15 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G056400.1 pacid=42814107 polypeptide=Potri.017G056400.1.p locus=Potri.017G056400 ID=Potri.017G056400.1.v4.1 annot-version=v4.1 ATGGAAGAACCTTTGAGTTATACTCGTACCTCTATCATGCTCCTACCCGATGATTGCCTGTCTATTGTTTTTCAGTTTCTTGTCTGTAGCTTTGATCATG AATCGTTTGGTTTGACTTGTCATCGCTGGCTTAATATTCAAAACACACATCGTCGGTCCTTACAATTTCATAGTTCATTGGCCCTCCCCAACGTTTCTTC GTTATCTCAAAGGGGGCTTGTTGTTAGTGCCTACCATCTCCATAGGCTGCTCACCCGTTTTCAGCATTTACACTATTTGTCCCTCTCTGGTTGCTCGGAG CTGCCTGATTCATGCTTAACCTTCTTGCAATCCTATCCTTCAAAGCTGCTTCATCTTAATCTGGACTGTTGTTTTGGAATCACTGACAATGGACTTTCAC TGGTTGCCGCTGGTTGCTCCTCCCTAGAGGCTATTAGTCTATATCGATGCAATATTACTGATGCTGGGTTAGAAACTTTAGCTAATGGTTGCTCAGCCTT GAAGCACATAAATCTCTCATACTGCTCACTTGTTTCTGACGGTGGGCTGAGAGCTCTCTCTCAATCTTGCTGTCATCTAGAGGCAGTTAAGATATCACAT TGCAGCGGAGTGAATGGTACAGGGTTTAAAGGGTGTTCACCAACTTTAACTCATATAGATGCTGATTCTTGTAACCTTGATCCAGAAGGCATTATGGGGA TTGTAAGTGGAGGTGGTCTTGAGTATTTGAATGTTTCTCGTGTAAACTGGTGGCGTAGTGGAGATACATTGGCAGTGATAGGTGCAGGTTTTGCCACAAG GCTTAAGATTCTCAATCTTTGGCTGTGCAGGACTGTTGGTGATGAGTCCATTGCGGCAATAGCGAGGGGGTGCCCATTGCTTCAAGAATGGAATGTGGCA TTGTGTCATGGGGTCAGGATTGCAGGATGGCAATCTATTGGGATCAATTGCAATAAATTGGAGAAACTTCATGTCAATCGTTGTCGAAATCTGTGTGATC TTGGGTTGCAAGCTTTGAGAGAGGGGTGCAAAAGGCTCTTGGTTTTGTACATTGGACGCACTTGGAAATTATCTGCTACCGCAATAGAGTTGTTTAAATT ATGTAGAGGTAATGTTGAGATCAGTAAAGAAGAGATAATGCTTATCGGGCCTAGTAATTAG
AA sequence Show only first row Show all	>Potri.017G056400.1 pacid=42814107 polypeptide=Potri.017G056400.1.p locus=Potri.017G056400 ID=Potri.017G056400.1.v4.1 annot-version=v4.1 MEEPLSYTRTSIMLLPDDCLSIVFQFLVCSFDHESFGLTCHRWLNIQNTHRRSLQFHSSLALPNVSSLSQRGLVVSAYHLHRLLTRFQHLHYLSLSGCSE LPDSCLTFLQSYPSKLLHLNLDCCFGITDNGLSLVAAGCSSLEAISLYRCNITDAGLETLANGCSALKHINLSYCSLVSDGGLRALSQSCCHLEAVKISH CSGVNGTGFKGCSPTLTHIDADSCNLDPEGIMGIVSGGGLEYLNVSRVNWWRSGDTLAVIGAGFATRLKILNLWLCRTVGDESIAAIARGCPLLQEWNVA LCHGVRIAGWQSIGINCNKLEKLHVNRCRNLCDLGLQALREGCKRLLVLYIGRTWKLSATAIELFKLCRGNVEISKEEIMLIGPSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	0	1
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	1.00	0.8540
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	2.44	0.7659
AT1G66920			Protein kinase superfamily pro...		Potri.007G125100 [exp]	2.82	0.7950
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.002G111400 [exp]	4.58	0.7557
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	6.32	0.8111
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237700 [exp]	7.34	0.7528
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Potri.007G144600 [exp]	13.19	0.7954
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	13.60	0.7764
AT2G30240		ATCHX13	CATION/H+ EXCHANGER 13, Cation...		Potri.010G182751 [exp]	14.14	0.7093
AT4G32560			paramyosin-related (.1.2.3)		Potri.006G247900 [exp]	14.14	0.6950

Compare expression of checked genes

Potri.017G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.