Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15570 1058 / 0 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 269 / 2e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 265 / 4e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 264 / 4e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 194 / 4e-51 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT5G37030 185 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 179 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G05540 172 / 6e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 169 / 3e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 167 / 6e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168300 [exp] 270 / 6e-76 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 265 / 3e-74 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 254 / 2e-70 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 197 / 6e-52 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140300 [exp] 192 / 5e-51 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 191 / 4e-50 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 191 / 6e-50 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.017G140601 [exp] 191 / 6e-50 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140200 [exp] 190 / 1e-49 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015030 [exp] 1115 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 1091 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 1067 / 0 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 262 / 2e-73 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 255 / 7e-71 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 250 / 3e-69 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 197 / 6e-52 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 196 / 2e-51 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10035776 [exp] 194 / 1e-50 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 187 / 6e-49 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.017G056700.2 pacid=42813891 polypeptide=Potri.017G056700.2.p locus=Potri.017G056700 ID=Potri.017G056700.2.v4.1 annot-version=v4.1 ATGGCAGTGGATAAAGATAGGCTTCGGGAAGAAGAAGAAGCATCCTTTGTTCGTTTTTGCAAAATTATTCTCGGCTGGGACTATTTTGGTCTCCTCACAG AAGCTGCTCAGAAACAGAAAAAGGAGCGTGGCAAGGGAGGTGGTTCGGGTTTAAGACAAGTAAAGAATACGTACAAAGATGTTGATGATTATCTTGCGAC TTTCGAGCCCCTTTTATTTGAAGAAGTTAAAGCTCAGATTATTCAAAAGAAGGATGACGAAGAAGTGACAGAATGGGTTCTGAGACTTGTAGTGGAATGC AATGAGTCAGAGGGATTTCTTTTACCTTCAGTTACTTATGGAGATGATGAAGGCGAGAAAATAGTACAAAATGATCTTTTGCTGCTTTCAGAAGATCAGT TTAAAGAGGGTGGTGGAAAATTCCCCCAGGTCTACGCATTTGCCTTGGTTGAGCAACGCCAACATAACCTTCTTAGACTTAGAATGTTTTTAGCTGGGGA GGTCATGAATTTAAATACAGATGTTATTGAATCTCGTACAAGACTGTTGAAGATGCACGGTTTGATTACTTCTCCTGGATTGCTGCATGAGAAACGCTTG TTTAGTGTAAAGATATGCAGCCTATCAACGATCTCTCGTGAATACTTTGCTTTGCGGTCAATTGGCTCTCTTCCTTTCAAGGATTTAATACTAACAGCTG CTGATAAAAGTTCCGGTTCTGAAGACCAGGCATGGAAAGTTTCCCAACCTCTGTCTGAACATTTTCAAGGAAGTCTTAATAAGTCACAAATGGAAGCAAT AGACGCTGGTCTATTGCGCAAAGCCTTTGTCTTGATACAGGGTCCTCCTGGAACCGGGAAGACACAAACTATCCTCGCTCTTCTTAGTGCAATTTTGCAT GCAACTCCAACAAGAGTGCACACCATGGCTGGGTTGCATGAAACTAAACGCGGGTCAGAACTACCAATTCAAGAAAAGTACAATCATTGGGCACGAGCTT CTCCATGGTGGACTGGTAACAATCCGAGAGATAAGAACATGCCTAAAGATGGCGATGATGGTTTTTTCCCTACCAGTGGAAATGATTTTAAACCAGAAGT CATTGCTTCCAGTCGCAAATATCATGTACGTGTGTTGGTATGTGCCCCATCAAACTCTGCTCTAGATGAAATAGTGTTGCGCCTTCTCAAGACAGGTGTT CATGATGAAAATGTCCGTTCATATAATCCTAAAATTGTGCGGATTGGTCTTAAAGCTCATCATTCTGTCCAGTCAGTCTGCATGGATAACCTTGTGAAAC AAAAACAAGGTGAATCAGCTTCTGATAAACAGAAACATAGAACTGCAGGAGGGGATACAGACAGTATCCGTGCTGCTATTCTAGAGGAATCTGTAATTGT CTTTTCCACCCTCAGCTTCAGTGGTTCGGCACTTTTTAGTAAATTGAACCATGGTTTCGATGTTGTTATTATAGATGAAGCTGCCCAAGCTGTTGAACCA GCAACTCTTGTGCCATTGGTCAATGGATGCAAACAAGTATTTCTGGTTGGTGATCCAGTTCAACTCCCAGCTACTGTAATTTCTCCCACTGCTGGGAAAT TTGGCTATGGCACGAGTTTGTTTGAAAGGTTTCAAAGAGCTGGTTATCCAGTAAATATGCTGAAGATGCAGTATCGTATGCATCCAGAGATAAGGAGCTT TCCTTCAAGTGAATTTTATGCCGAGGCACTGCAGGATGCAGATGATCTTGAGAGAAGGACAACACGTGATTGGCATCAGTATCACTGCTTTGGTCCGTTT TGCTTCTTTGATGTACATGAAGGGAAAGAATCTCAGCCTTCTGGAAGTGGGTCCTGGGTGAATGTTGATGAAGTTGAATTTGTGCTACTCCTGTATCATA AACTGGTGACCATGTATCCAGAGCTTAGGTCGAGCTCACAGTTTGCAATTATATCACCCTATAGACACCAAGTCAAGCTTTTCCAGGATCGATTTCGGGA TGCTTTTGGGCAGGAGTCCAAAAAATTTGTGGATATTCAAACTGTTGATGGTTTCCAGGGTCGAGAAAAGGATGTCGCAATATTCTCATGTGTTAGGTCA AATGATGATAGAAGGATTGGGTTTGTATCTGATGCCCGGCGAATGAACGTTGGTATCACTCGCGCTAAGTCCGCTGTCCTGGTCGTAGGGTCAGCATCAA CTTTGAGGAATGATGAGCATTGGAACAACCTTGTGGAAAGTGCCGAGAAGAGAAATGTTCTATTCAAGGTCTCGAAGCCGTACTCTTCATTTTTCAGTGA CTCAAATCTCAACTCCATGAAGGTGGAGAGATCACTACCAGATGGACTTGACACGGGGGACATGGAGATTAATGAGCTCATGGATGTACATCGGGAACAT GCTGATGAAGAACAAGCAGAGGACAATGACTTAGAAGATGGTGAAATGGATGGAGGTGGCTATGATGAGGACTGA
AA sequence Show only first row Show all	>Potri.017G056700.2 pacid=42813891 polypeptide=Potri.017G056700.2.p locus=Potri.017G056700 ID=Potri.017G056700.2.v4.1 annot-version=v4.1 MAVDKDRLREEEEASFVRFCKIILGWDYFGLLTEAAQKQKKERGKGGGSGLRQVKNTYKDVDDYLATFEPLLFEEVKAQIIQKKDDEEVTEWVLRLVVEC NESEGFLLPSVTYGDDEGEKIVQNDLLLLSEDQFKEGGGKFPQVYAFALVEQRQHNLLRLRMFLAGEVMNLNTDVIESRTRLLKMHGLITSPGLLHEKRL FSVKICSLSTISREYFALRSIGSLPFKDLILTAADKSSGSEDQAWKVSQPLSEHFQGSLNKSQMEAIDAGLLRKAFVLIQGPPGTGKTQTILALLSAILH ATPTRVHTMAGLHETKRGSELPIQEKYNHWARASPWWTGNNPRDKNMPKDGDDGFFPTSGNDFKPEVIASSRKYHVRVLVCAPSNSALDEIVLRLLKTGV HDENVRSYNPKIVRIGLKAHHSVQSVCMDNLVKQKQGESASDKQKHRTAGGDTDSIRAAILEESVIVFSTLSFSGSALFSKLNHGFDVVIIDEAAQAVEP ATLVPLVNGCKQVFLVGDPVQLPATVISPTAGKFGYGTSLFERFQRAGYPVNMLKMQYRMHPEIRSFPSSEFYAEALQDADDLERRTTRDWHQYHCFGPF CFFDVHEGKESQPSGSGSWVNVDEVEFVLLLYHKLVTMYPELRSSSQFAIISPYRHQVKLFQDRFRDAFGQESKKFVDIQTVDGFQGREKDVAIFSCVRS NDDRRIGFVSDARRMNVGITRAKSAVLVVGSASTLRNDEHWNNLVESAEKRNVLFKVSKPYSSFFSDSNLNSMKVERSLPDGLDTGDMEINELMDVHREH ADEEQAEDNDLEDGEMDGGGYDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	0	1
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	1.73	0.9113
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	2.82	0.9017
AT5G25070			unknown protein		Potri.002G000800 [exp]	6.00	0.8660
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	6.70	0.8964
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	8.06	0.8847
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	10.39	0.8742
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	12.96	0.8805
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.002G237950 [exp]	14.17	0.8111
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.008G173500 [exp]	14.28	0.8545
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	15.23	0.8404

Compare expression of checked genes

Potri.017G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.