Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32760 369 / 4e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016662 [exp] 416 / 2e-145 AT2G32760 388 / 1e-134 unknown protein Lus10022576 [exp] 404 / 7e-141 AT2G32760 384 / 4e-133 unknown protein Lus10037826 [exp] 193 / 2e-60 AT2G32760 172 / 2e-53 unknown protein Lus10022575 [exp] 107 / 4e-28 AT2G32760 111 / 5e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G056800.1 pacid=42813709 polypeptide=Potri.017G056800.1.p locus=Potri.017G056800 ID=Potri.017G056800.1.v4.1 annot-version=v4.1 ATGGAACCAGACCGCATCCTCTCTCCAGACCCATCCACATCAAAATCAAAACCAACCGAATCGGAGAAAGAAAAATTCATCGAATGGGAAGATTACGAGC ACGAAGTTGCAAGATTATGGAGTCTCTCTTCTTCTCTCAACGAATCTAAACAAAAGAAGCAAAATTTTGAACAGAAACTTCGCTCCCTTATTCAAGTGAA GGAGGAGGCGTTAAGTAGATTGAATAAATTGGAGGAGATGAAGGAAAGGGTGGAGGCTAGGAAATTGGTGATAGAAAGAATTAAAGGGCAATCTAAGGTT GCGGCGGAGAATTCGACAAAAGAAGAGGAGAGGCTTAGTTCGGAAGTTCGATCATTATTAGTTGCTGGCACCGCGCTTTCTGTAGCTAGTAAGCAATTGC AGGATTCAAGAAGGTCACTTGCCGGAGAAAGGGGTTATGTTCGCCTCACAAAGTTGCAGAAGAAGCTAAGACTGAGACAACAATTTATGATATCACAAGT TTCATTGCTTTATCCTATTAAGATATCAGCTGGACCTTCAGAGGAGCAGGAACTTGAATCTTTCCCAAGCAGTAGTAAATCAGGAAACTATGTTGGTTCT AAACCCGTTAATCAAGGATCCTTGACAATTTTAGGTCTGCATTTGACGATGGCTCCCTTTACAAAGATGAGTTTTTTCACTGACAAGAAGGAGGTTCAGA GGTCTGCTAGTGCCCTCGGACACGTTGCTCATGCTGTTTCACTTATTGCCTCGTACTTGGAAGTTCCTTTGCGTTACTCTTTACGTTTGGGTGGTTCCAA TTCCTATATTATTGATTGTGCACCTTCAGTAGAGTCATCTGATATGTTGTCAAGTACATTGTTGACTGCAAATACAAAACCTGTTGAATTTCCCCTCTTT TTAGAAGGTCAAGATACCACGCGAGCAGCATATGCTGTATTCCTTTTAAACAAGGATCTGGAGCAGCTTTTAAATTACATTGGTGTTAGAAGTTTAGGAC CACGGCATGTATTGGCTAATTTGAAGGAGCTTACAAGGACAATTCAGTCAGCAGAATTCTTAGACTCATGA
AA sequence Show only first row Show all	>Potri.017G056800.1 pacid=42813709 polypeptide=Potri.017G056800.1.p locus=Potri.017G056800 ID=Potri.017G056800.1.v4.1 annot-version=v4.1 MEPDRILSPDPSTSKSKPTESEKEKFIEWEDYEHEVARLWSLSSSLNESKQKKQNFEQKLRSLIQVKEEALSRLNKLEEMKERVEARKLVIERIKGQSKV AAENSTKEEERLSSEVRSLLVAGTALSVASKQLQDSRRSLAGERGYVRLTKLQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSSSKSGNYVGS KPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRYSLRLGGSNSYIIDCAPSVESSDMLSSTLLTANTKPVEFPLF LEGQDTTRAAYAVFLLNKDLEQLLNYIGVRSLGPRHVLANLKELTRTIQSAEFLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32760			unknown protein		Potri.017G056800 [exp]	0	1
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.013G079900 [exp]	3.00	0.8237
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	7.74	0.8436
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	8.94	0.8307	APK2.1
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	13.41	0.8149
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	14.56	0.7488
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	16.00	0.8073
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.004G205100 [exp]	16.24	0.7723
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	18.22	0.8173	APG9.1
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	20.44	0.7933
AT1G25370			Protein of unknown function (D...		Potri.008G122600 [exp]	31.81	0.7726

Compare expression of checked genes

Potri.017G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.