Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 601 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 574 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 108 / 1e-25 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 98 / 8e-22 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 95 / 5e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 79 / 2e-15 RabGAP/TBC domain-containing protein (.1.2) AT4G27100 77 / 7e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 76 / 1e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 75 / 4e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G54780 72 / 3e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316700 [exp] 709 / 0 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 443 / 6e-153 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 432 / 1e-148 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 105 / 3e-24 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 99 / 2e-22 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 87 / 7e-18 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 86 / 1e-17 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 79 / 1e-15 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 78 / 4e-15 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017104 [exp] 620 / 0 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 580 / 0 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 105 / 3e-24 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 99 / 1e-22 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 96 / 8e-21 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022905 [exp] 94 / 2e-20 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 92 / 7e-20 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 82 / 5e-17 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 84 / 9e-17 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10011159 [exp] 81 / 4e-16 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.017G057100.1 pacid=42812905 polypeptide=Potri.017G057100.1.p locus=Potri.017G057100 ID=Potri.017G057100.1.v4.1 annot-version=v4.1 ATGGTGAAGAAAAAGGTACCAGATTGGCTCAACAGCTCTCTCTGGTCCTCCTCCTCCACCACCACCACCACCTCGTTCTCCTACTCCGACACCAATCACT TCGACCACCACTCATCCACCTCCGCCTCACCTCCAATCGATCCACCGCTACCTCCTGCCGCCACCAGAGACGAACAACAGCATCCGCCTCGTCATCATCA TAATTATCATCCGCGAAAACCTGACATTAAAGAAGATAAGCACTCAAAAAGCAGCATCGTTAACGACAACATCAGTAATAATAATAGTAATAATTCTATT AGTAATAATAAAATAGATAATCGAAAAGCTGATAATACTGAGAGCTCTGCGGAGGATATTTCAAATCAGGCTCTTCTTTTGACCGAGTTATCAAGGAAGG TGATAAATATGGGGGAATTAAGGAGGATAGCTTCTCAAGGGATACCTGATGGTGTTGGTATTCGTTCCACGGTTTGGAAGCTCTTGTTGGGGTATTTACC ACCTGATCGTTCGCTTTGGTCGTCTGAATTGGCTAAGAAGAGATCTCAGTACAAGCGATTTAAAGAAGAGCTTTTGATGAATCCTTCAGAAATAACAAGG AGGTTGGAGAAAATGATGGGTTTTGACAATGATGATGCAAAATCTGAAAGCCGTTATGTGCTCTCAAGATCAAAGATAACTCATGGGGAGCATCCTTTGA GCCTTGGGAAGAGCAGCATTTGGAATAAATTCTTTCAGGACTCAGAGATTATAGAGCAGATTGATCGAGATGTGAAACGCACTCACCCGGACATGCACTT CTTTTCTGGGGACTCATCATTTGCAAAATCCAATCAGGAGGCTTTGAGAAACATACTGATTGTATTTGCAAAGTTAAATCCGGGAATACGATATGTTCAA GGGATGAATGAAATTTTGGCACCTCTATTTTACGTATTCAAAAATGACCCTGATGAAGAAATGGAGGCCTGTGCAGAAGCAGACACATTTTTCTGCTTTG TCGAGTTATTGAGTGGATTCCGGGATCATTTCTGTCAGCAACTTGACAACAGTGTTGTGGGAATTCGTTCAACTATTACAAGATTGTCGCATCTTTTGAA GGAGCATGATGAAGAACTTTGGCGTCATCTTGAGGTCACAACCAAAGTCAACCCCCAGTTTTATTCATTTCGGTGGATTACTCTCCTCTTGACTCAGGAG TTCAATTTCGCAGATAGTATTCACATTTGGGACACACTTCTAAGTGACCCTGAGGGTCCTCAGGAAACTTTGCTTAGGGTATGTTGTGCAATGCTGATTC TCGTTCGGAGGCGTCTACTAGCTGGGGATTTCACTTCTATTCTCAAGCTACTTCAGAACTACCCCCCAACAAACATCAGTCATTTGCTCTATGTCGCAAA CAAGTTGCGTGGTCAACCGTCACACTAA
AA sequence Show only first row Show all	>Potri.017G057100.1 pacid=42812905 polypeptide=Potri.017G057100.1.p locus=Potri.017G057100 ID=Potri.017G057100.1.v4.1 annot-version=v4.1 MVKKKVPDWLNSSLWSSSSTTTTTSFSYSDTNHFDHHSSTSASPPIDPPLPPAATRDEQQHPPRHHHNYHPRKPDIKEDKHSKSSIVNDNISNNNSNNSI SNNKIDNRKADNTESSAEDISNQALLLTELSRKVINMGELRRIASQGIPDGVGIRSTVWKLLLGYLPPDRSLWSSELAKKRSQYKRFKEELLMNPSEITR RLEKMMGFDNDDAKSESRYVLSRSKITHGEHPLSLGKSSIWNKFFQDSEIIEQIDRDVKRTHPDMHFFSGDSSFAKSNQEALRNILIVFAKLNPGIRYVQ GMNEILAPLFYVFKNDPDEEMEACAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRSTITRLSHLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQE FNFADSIHIWDTLLSDPEGPQETLLRVCCAMLILVRRRLLAGDFTSILKLLQNYPPTNISHLLYVANKLRGQPSH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	0	1
					Potri.002G208200 [exp]	1.73	0.9223
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Potri.015G100400 [exp]	3.87	0.8387
AT3G26990			ENTH/VHS family protein (.1)		Potri.001G325700 [exp]	5.74	0.8828
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	6.92	0.8800
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	12.64	0.8686
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	14.14	0.8466
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	14.45	0.8364
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	15.29	0.8641
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	16.12	0.8397
AT4G31430			unknown protein		Potri.006G275200 [exp]	16.24	0.8302

Compare expression of checked genes

Potri.017G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.