Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14147 318 / 4e-113 ARPC4 protein binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027499 [exp] 254 / 1e-81 AT4G14147 254 / 2e-81 protein binding (.1.2) Lus10038118 [exp] 220 / 2e-67 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05856 [poplar] [flax] ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Representative CDS sequence Show only first row Show all	>Potri.017G057400.3 pacid=42813428 polypeptide=Potri.017G057400.3.p locus=Potri.017G057400 ID=Potri.017G057400.3.v4.1 annot-version=v4.1 ATGGCAACTTCATTGCGCTTGTATTTAACATGTATACGGAATACTTTAGAGGCATCCTTGTGCCTGCAGAACTTCCCTTGTCAAGAAGTTGAAAGGCATA ACAAACCAGAGGTCGAAATGAAGACGAGCCCGGAACTTTTGCTAAATTCTATTTTGATATGTAGAAATGAGGCTGAAAAGTGCTTGATAGAAACATCTAT TAATTCGTTGCGTATTAGCCTCAAGGTAAAGCAGGCAGATGAGCTTGAAAACATACTAACTAAAAAATTTCTTAGATTTTTATCAATGAGGGCAGAAGCA TTTCAAGTGTTGAGACGAAAGCCTGTACAGGGTTATGACATTAGCTTTCTAATCACAAACTTCCACTGTGAGGAGATGCAGAAACGCAAACTCATCGATT TTATTGTGCAATTCATGGAAGATATTGAGAAGGAGATAAGTGAATTGAAAATGTCTGTGAACACACGAGGGAGGCTGGTTGCTACAGAGTTTCTGAAGCA ATTTATTTAA
AA sequence Show only first row Show all	>Potri.017G057400.3 pacid=42813428 polypeptide=Potri.017G057400.3.p locus=Potri.017G057400 ID=Potri.017G057400.3.v4.1 annot-version=v4.1 MATSLRLYLTCIRNTLEASLCLQNFPCQEVERHNKPEVEMKTSPELLLNSILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEA FQVLRRKPVQGYDISFLITNFHCEEMQKRKLIDFIVQFMEDIEKEISELKMSVNTRGRLVATEFLKQFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14147		ARPC4	protein binding (.1.2)		Potri.017G057400 [exp]	0	1
AT5G01970			unknown protein		Potri.016G141300 [exp]	4.35	0.8869
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	6.24	0.8606
AT3G61660			unknown protein		Potri.002G168300 [exp]	7.34	0.8674
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	8.60	0.8077
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.009G027900 [exp]	12.84	0.8511	RAB8.1
AT5G57460			unknown protein		Potri.006G168200 [exp]	14.45	0.8254
AT1G33970			P-loop containing nucleoside t...		Potri.019G077300 [exp]	25.47	0.7946
AT1G19130			unknown protein		Potri.006G140000 [exp]	27.27	0.8180
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	27.49	0.7925
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	27.62	0.8393	Pt-SEC22.1

Compare expression of checked genes

Potri.017G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.