Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 418 / 8e-150 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317400 [exp] 473 / 1e-171 AT4G22330 398 / 6e-142 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 424 / 3e-152 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 419 / 5e-150 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043146 [exp] 434 / 5e-156 AT4G22330 422 / 1e-151 Alkaline phytoceramidase (aPHC) (.1) Lus10032606 [exp] 432 / 4e-155 AT4G22330 423 / 9e-152 Alkaline phytoceramidase (aPHC) (.1) Lus10032605 [exp] 429 / 4e-154 AT4G22330 420 / 1e-150 Alkaline phytoceramidase (aPHC) (.1) Lus10043147 [exp] 423 / 1e-151 AT4G22330 415 / 9e-149 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF05875 [poplar] [flax] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Potri.017G057500.1 pacid=42812951 polypeptide=Potri.017G057500.1.p locus=Potri.017G057500 ID=Potri.017G057500.1.v4.1 annot-version=v4.1 ATGGCAGAAGGAATATCGAGCTTTTGGGGCCCTGTAACATCTGCAGAATGGTGTGAAAAAAATTATGTGTATTCATCTTATATTGCTGAGTTTTTTAACA CCATATCAAATATCCCAGGCATTCTTTTGGCACTCGCTGGCCTTATAAATGCTTTCAGACAACGGTTCGAGAAGAGGTTTAGTATACTTCACATATCTAA TATGATACTTGCCATTGGAAGTATGTTATACCATGCCACTTTGCAACACATGCAGCAGCAAGGTGATGAAACACCAATGGTTTGGGAAATGCTGTTGTAT ATCTACATCCTTTACTCTCCAGATTGGCACTACCGAAGTACGATGCCCACCTTCTTGTTCTTTTATGGAGCTGCATTTGCAATTGTCCATGCATTGGTTC GTTTAAGAATGGGTTTCAAGGTACATTATGTGATACTTTGCCTTCTCTGTGTTCCCCGGATGTACAAGTACTACATCTACACAAAAGATGCATCTGCAAA GCGGCTTGCAAAATTATATTTGGCTACCATTTTCATGGGAAGTCTTTGTTGGCTTTTTGATCGCCTATTCTGCAACAACATTTCTCGGTGGTACTTCAAC CCCGAGGGACATGCTTTATGGCATGTCTTGATGGGGTTCAATTCATATTTTGCAAACACTTTCCTGATGTTTTGTCGTGCTCAGCAGTTGGGTTGGAATC CAAAAGTTGCCCACTTCATGGGATTTTTCCCGTATGTGAAAATTCAAAAACCAAAAACCCAGTGA
AA sequence Show only first row Show all	>Potri.017G057500.1 pacid=42812951 polypeptide=Potri.017G057500.1.p locus=Potri.017G057500 ID=Potri.017G057500.1.v4.1 annot-version=v4.1 MAEGISSFWGPVTSAEWCEKNYVYSSYIAEFFNTISNIPGILLALAGLINAFRQRFEKRFSILHISNMILAIGSMLYHATLQHMQQQGDETPMVWEMLLY IYILYSPDWHYRSTMPTFLFFYGAAFAIVHALVRLRMGFKVHYVILCLLCVPRMYKYYIYTKDASAKRLAKLYLATIFMGSLCWLFDRLFCNNISRWYFN PEGHALWHVLMGFNSYFANTFLMFCRAQQLGWNPKVAHFMGFFPYVKIQKPKTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.017G057500 [exp]	0	1
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.012G012700 [exp]	5.29	0.8979
AT1G20760			Calcium-binding EF hand family...		Potri.002G008300 [exp]	5.65	0.9044
AT4G19350		EMB3006	embryo defective 3006 (.1)		Potri.004G235300 [exp]	8.77	0.8927
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	9.59	0.8606
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.001G467200 [exp]	9.79	0.8885
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	10.00	0.8703
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	11.48	0.9017	KOR1.2
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.007G060800 [exp]	11.83	0.8891
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	12.00	0.8904
AT1G16560			Per1-like family protein (.1.2...		Potri.007G065800 [exp]	12.64	0.8924

Compare expression of checked genes

Potri.017G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.