Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13780 1255 / 0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT3G55400 164 / 2e-42 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT2G40660 157 / 6e-42 Nucleic acid-binding, OB-fold-like protein (.1) AT3G59980 133 / 1e-34 Nucleic acid-binding, OB-fold-like protein (.1) AT5G02680 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317500 [exp] 1459 / 0 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.010G207300 [exp] 172 / 2e-45 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Potri.019G058700 [exp] 164 / 3e-44 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G000200 [exp] 141 / 3e-37 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016658 [exp] 1346 / 0 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 1310 / 0 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10010450 [exp] 982 / 0 AT4G13780 937 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10034239 [exp] 174 / 3e-47 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029026 [exp] 172 / 7e-47 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1) Lus10005156 [exp] 164 / 6e-42 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10027077 [exp] 149 / 1e-39 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025611 [exp] 147 / 5e-39 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1) Lus10001704 [exp] 147 / 1e-36 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10015552 [exp] 48 / 4e-05 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01588 [poplar] [flax] tRNA_bind Putative tRNA binding domain CL0039 [poplar] [flax] HUP PF09334 [poplar] [flax] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Potri.017G057700.1 pacid=42813864 polypeptide=Potri.017G057700.1.p locus=Potri.017G057700 ID=Potri.017G057700.1.v4.1 annot-version=v4.1 ATGGGAGATCTCGATCGGCCGGTCCCGAAGCTACCGATCCCGGGAAAGCGAAACATACTGATAACCAGTGCTTTGCCTTATGTCAATAACGTCCCTCATC TCGGCAACATTATCGGCTGCGTGCTGAGTGCTGACGTGTTTGCTAGATACTGTCGTCTCCGAGGATATAATGCGATTTATATTTGTGGAACTGACGAGTA CGGGACTGCGACTGAGACTAAAGCCATGGAGGAGAATTCTACCCCTAAACAAATTTGTGACAAGTATCACGCGATTCATAGGGAGGTTTATAAATGGTTT AATATAAGTTTTGATGAATTTGGGCGGACGTCGAGTCCGCAGCAAACTGAAGTTTGTCAAGCAATTTTTAAGAAATTGTTAGATAATAACTGGCTTTCGG AGAATACAATGAAACAGCTGTACTGTGATACATGTGAAAGATTCTTGGCTGATCGGCTTGTGGAAGGTACTTGTCCTACAGAAGGATGTAATTATGACTC TGCACGAGGAGATCAGTGTGAAAATTGTGGAAAGCTTTTGAATCCAACCGAGTTAATAAATCCCAGGTGCAAGCAATGTAAGAATACACCAAGAATCCGC GATACGAACCACTTGTTTCTTGAGCTTCCTCAGCTGAAGGATAAATTAGTAAGCTATATCGAGAGTATGTCAGTAGCTGGATCTTGGAGCCAAAATGCCA TTCAAACAACGAACGCATGGCTTAAAGAAGGACTAAAACCACGATGCATTACTAGGGATCTGAAGTGGGGTGTTCCAGTTCCACTTGATGAATTTAAGGA CAAGGTGTTTTATGTTTGGTTTGATGCTCCTATTGGATATGTATCCATTACTTCTTGCTACACTCCTGATTGGGAGAAGTGGTGGAAGAATCCTGATAAT GTGGAGCTGTATCAGTTTATGGGAAAAGACAATGTACCATTCCACACTGTGATGTTTCCATCGACACTTATTGGAACAGGCGAAAATTGGACCATGATGA AGACTATAAGTGTAACTGAATACTTAAATTATGAAGCAGGGAAGTTTTCCAAGAGTAAGGGTGTAGGAGTGTTTGGAAATGATGCAAAGGATACAAATAT TCCTGTAGAAGTTTGGAGATATTATCTGCTAACCAATAGGCCTGAGGTGTCTGACACACTATTTACATGGTCTGATTTGCAAGCAAAACTTAACAGCGAG CTGCTGAATAATTTGGGCAACTTTATTAATCGAGTTCTGAGCTTTCTTGCTAAACCACCAGGTTTGGGATATGGTTCTATCATTCCAGATGCTCCAGGTG CAGACTCCCATCCCTTGACAAAGAAATTGGCTGGAGAAGTTGGTAAATATGTAGAGCAGTACCTGGAAGCCATGGAGAAGGTTAAGTTAAAGCAAGGATT GAAAACTGCAATGAGCATTTCTAGTGAGGGGAACGCCTATCTGCAAGAAAGCCAATTTTGGAAGCTTTACAAGGAAGACCAACCTTCTTGTTCCATAGTT ATAAAGACTTCATTGGGTCTAGTATATCTTCTTGCATGTTTATTGGAACCTTTCATACCATCTTTCTCTGTTGAGGTCTTCAAGCAGCTTAATTTGCCTC TTGAACAAGCTTCACTTTGTGACGAGAAAGGCGATATGGATAGGGCAAAAAGACCTTGGGAGATCCTACCTGCTGGGCACAAGATTGGAACTCCAGAGCC CTTGTTCAAGGAACTGAAAGATGAAGAAGTGGAGGACTACAGGAGGAGATTTGCTGGAAGTCAGGCTGATAGACTTGAGCGGGATGAAGCTGAAAAGGCA GCCAAGCTTGCCGAGCAACTGAAGAAAAAAGCTTCAGTTGGTGGTGGGAAGAAGCAACAGGCCAAAAAACCTGCTTCTGAAGCCAAATCAAAGGGCAGTG TTGAACGAGAAATCTCCATCACAAGACTTGATATCCGTGTTGGCCTAATTAAGAAAGTTCAGAAGCATCCTGATGCTGATTCGTTGTATGTGGAAGAAAT CGATTTGGGTGAAGGAGATTGTAGAACGGTTGTTAGTGGACTTGTCAAATATATACCTCTTGAGGAGATGCAGAATCGTAAGGTCTGCGTCCTTTGCAAC CTAAAGCCAGCATCCATGAGGGGCATTAAGTCACAGGCTATGGTTCTTGCTGCTTCCAATAGTGACCACACAAAGGTCGAATTGGTTGATCCACCCCCAT CCGCTGTTGTTGGAGAGAGAGTTACATTTCAAGGGTTTGAAGGTGAACCTGATGATGTCCTAAACCCTAAGAAGAAGGTCTGGGAGACACTACAGGTGGA TCTGCAAACTAACAGTGACCTGATAGCCTGCTACAAAGATATTCCGCTAACCACATCTGCTGGTGTGTGCAAGGTTGCATCCATTAGTTGTGGTTCCATT AGGTAG
AA sequence Show only first row Show all	>Potri.017G057700.1 pacid=42813864 polypeptide=Potri.017G057700.1.p locus=Potri.017G057700 ID=Potri.017G057700.1.v4.1 annot-version=v4.1 MGDLDRPVPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENSTPKQICDKYHAIHREVYKWF NISFDEFGRTSSPQQTEVCQAIFKKLLDNNWLSENTMKQLYCDTCERFLADRLVEGTCPTEGCNYDSARGDQCENCGKLLNPTELINPRCKQCKNTPRIR DTNHLFLELPQLKDKLVSYIESMSVAGSWSQNAIQTTNAWLKEGLKPRCITRDLKWGVPVPLDEFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPDN VELYQFMGKDNVPFHTVMFPSTLIGTGENWTMMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSE LLNNLGNFINRVLSFLAKPPGLGYGSIIPDAPGADSHPLTKKLAGEVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIV IKTSLGLVYLLACLLEPFIPSFSVEVFKQLNLPLEQASLCDEKGDMDRAKRPWEILPAGHKIGTPEPLFKELKDEEVEDYRRRFAGSQADRLERDEAEKA AKLAEQLKKKASVGGGKKQQAKKPASEAKSKGSVEREISITRLDIRVGLIKKVQKHPDADSLYVEEIDLGEGDCRTVVSGLVKYIPLEEMQNRKVCVLCN LKPASMRGIKSQAMVLAASNSDHTKVELVDPPPSAVVGERVTFQGFEGEPDDVLNPKKKVWETLQVDLQTNSDLIACYKDIPLTTSAGVCKVASISCGSI R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	2.23	0.8249	GLYRS.2
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	9.27	0.7690
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	10.24	0.7511	Pt-PURE.2
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	11.22	0.6857
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.008G145600 [exp]	19.74	0.6926	THRRS.1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.010G051700 [exp]	19.74	0.6693
AT4G39300			unknown protein		Potri.004G154800 [exp]	20.49	0.7230
AT4G32910			unknown protein		Potri.018G044300 [exp]	21.00	0.7168
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	22.44	0.6345	ATUBA1.3
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	22.44	0.7114	Pt-RPL3.3

Compare expression of checked genes

Potri.017G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.