Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BGAL9.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32810 1353 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT2G28470 927 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 879 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 874 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT3G52840 785 / 0 BGAL2 beta-galactosidase 2 (.1) AT4G26140 779 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 758 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G63810 751 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G56870 750 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 722 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012400 [exp] 928 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 888 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 885 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 880 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 868 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 860 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G018100 [exp] 858 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 827 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.004G159800 [exp] 768 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016655 [exp] 1395 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10015625 [exp] 888 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 887 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 877 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 846 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 840 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 813 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10006733 [exp] 805 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10022645 [exp] 794 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 783 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G057900.1 pacid=42813442 polypeptide=Potri.017G057900.1.p locus=Potri.017G057900 ID=Potri.017G057900.1.v4.1 annot-version=v4.1 ATGATTTCTTCTTCAAGACTTAAAATATCCTTCTTTCAATTTCTCTCTTTTTATCTAATTATCCAATTCACCCTCATATCTTCCAACTTTTTCGAACCGT TCAATGTTACTTACGATCACCGTGCTCTCATCATCGACGGCCGCCGCCGCATACTCAATTCCGCCGGAATCCACTATCCTCGCGCCACTCCCGAGATGTG GCCTGATTTGATTGCAAAAAGTAAGGAAGGTGGAGCAGATGTGGTTCAAACTTATGTATTTTGGGGCGGGCATGAGCCAGTTAAAGGACAGTATTACTTT GAAGGGAGATATGATCTTGTAAAGTTTGTGAAGCTAGTGGGTGAAAGTGGACTCTATCTTCATCTTCGCATAGGCCCTTATGTTTGTGCAGAGTGGAATT TCGGGGGCTTCCCAGTGTGGTTGCGAGATGTCCCCGGCGTAGTCTTTAGAACAGATAATGCTCCTTTTAAGGAAGAGATGCAGAAGTTTGTTACAAAGAT AGTAGATCTGATGAGAGAGGAAATGCTATTATCTTGGCAAGGTGGTCCAATCATCATGTTCCAGATTGAAAACGAATATGGGAATATTGAGCACTCATTT GGCCAGGGAGGGAAGGAATACATGAAATGGGCTGCTGGAATGGCTTTAGCACTTGACGCTGGGGTTCCATGGGTGATGTGCAAGCAAACTGATGCTCCAG AAAACATTATAGATGCATGCAATGGATACTATTGTGATGGTTTTAAACCAAATTCCCCTAAGAAACCAATATTTTGGACCGAAGATTGGGATGGATGGTA TACAACTTGGGGTGGAAGATTGCCTCACAGGCCTGTTGAAGACCTTGCCTTTGCTGTTGCACGCTTTTTTCAACGTGGAGGGAGTTTCCAGAATTATTAT ATGTATTTTGGTGGAACAAACTTCGGCCGGACTTCTGGGGGTCCATTCTATATAACTAGTTATGACTATGATGCTCCAATTGATGAATATGGTTTGTTGA GCGAGCCCAAGTGGGGGCATTTGAAAGATTTGCATGCTGCCATAAAGCTTTGTGAACCTGCTCTAGTTGCTGCAGATTCAGCTCAGTATATAAAACTGGG ACCAAAACAAGAGGCACATGTGTACGGTGGAAGTCTAAGCATTCAAGGCATGAATTTCTCTCAGTATGGAAGTCAAAGCAAGTGCTCTGCATTTCTTGCT AATATTGATGAACGTCAAGCAGCTACTGTGAGATTCCTTGGTCAATCATTTACTTTACCTCCATGGTCAGTGAGTATATTACCAGACTGCAGAAATACTG TCTTCAACACTGCCAAGGTTGCAGCACAGACTCATATCAAGACTGTGGAGTTTGTTTTGCCTCTTTCAAACAGTTCTCTACTTCCACAATTCATTGTTCA GAATGAAGATTCTCCACAATCAACATCCTGGCTGATTGCCAAAGAGCCAATTACTTTGTGGAGTGAGGAGAATTTTACTGTGAAAGGCATATTGGAGCAT TTGAATGTGACAAAGGATGAATCTGACTATCTGTGGTATTTCACAAGAATATATGTTTCTGATGATGACATTGCATTTTGGGAGAAAAATAAAGTCAGCC CTGCAGTTTCAATAGATAGCATGCGTGATGTGTTGCGTGTATTTATCAATGGCCAGCTTACAGGCAGTGTGGTTGGTCATTGGGTCAAGGCGGTCCAGCC AGTTCAGTTTCAGAAAGGATACAATGAGTTAGTGTTGTTGTCTCAGACAGTTGGATTGCAGAATTACGGTGCCTTCTTAGAAAGAGATGGAGCAGGCTTT AAAGGTCAAATTAAGCTTACTGGATTTAAAAATGGGGATATAGACCTCTCAAACTTATCATGGACTTACCAGGTTGGGCTTAAGGGTGAGTTCCTTAAAG TTTACAGCACAGGCGATAATGAAAAGTTTGAATGGTCTGAATTGGCAGTTGATGCTACTCCATCCACATTTACCTGGTATAAGACATTCTTCGATGCACC ATCCGGGGTTGACCCAGTTGCTCTTGATTTGGGAAGCATGGGAAAGGGCCAGGCATGGGTCAATGGTCACCACATAGGAAGATACTGGACAGTGGTTTCT CCAAAAGATGGATGCGGAAGTTGTGATTATCGTGGAGCCTACAGTTCTGGAAAGTGTAGAACAAATTGTGGCAATCCTACTCAAACCTGGTACCATGTCC CTCGGGCATGGTTAGAGGCATCAAATAATCTACTTGTCGTGTTTGAGGAAACAGGAGGGAATCCATTTGAGATTTCAGTTAAGTTACGGTCAGCAAAAGT GATTTGTGCTCAAGTCTCAGAGTCCCATTATCCACCTCTCAGGAAGTGGTCCCGGGCAGATTTAACTGGTGGGAATATATCACGCAATGATATGACACCA GAAATGCACTTGAAGTGTCAAGATGGGCATATAATGTCCTCAATAGAATTTGCTAGCTATGGAACTCCTAACGGTAGCTGCCAGAAGTTTTCTAGGGGCA ACTGCCATGCCTCCAATTCTTCTTCTGTGGTCACTGAGGCTTGCCAGGGGAAAAATAAGTGTGATATTGCGATTTCGAATGCTGTATTTGGAGACCCATG CCGCGGGGTTATCAAGACACTGGCCGTTGAGGCAAGATGCATCTCATCATCAAATATTGGTTACTCTCGCTACTGA
AA sequence Show only first row Show all	>Potri.017G057900.1 pacid=42813442 polypeptide=Potri.017G057900.1.p locus=Potri.017G057900 ID=Potri.017G057900.1.v4.1 annot-version=v4.1 MISSSRLKISFFQFLSFYLIIQFTLISSNFFEPFNVTYDHRALIIDGRRRILNSAGIHYPRATPEMWPDLIAKSKEGGADVVQTYVFWGGHEPVKGQYYF EGRYDLVKFVKLVGESGLYLHLRIGPYVCAEWNFGGFPVWLRDVPGVVFRTDNAPFKEEMQKFVTKIVDLMREEMLLSWQGGPIIMFQIENEYGNIEHSF GQGGKEYMKWAAGMALALDAGVPWVMCKQTDAPENIIDACNGYYCDGFKPNSPKKPIFWTEDWDGWYTTWGGRLPHRPVEDLAFAVARFFQRGGSFQNYY MYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPALVAADSAQYIKLGPKQEAHVYGGSLSIQGMNFSQYGSQSKCSAFLA NIDERQAATVRFLGQSFTLPPWSVSILPDCRNTVFNTAKVAAQTHIKTVEFVLPLSNSSLLPQFIVQNEDSPQSTSWLIAKEPITLWSEENFTVKGILEH LNVTKDESDYLWYFTRIYVSDDDIAFWEKNKVSPAVSIDSMRDVLRVFINGQLTGSVVGHWVKAVQPVQFQKGYNELVLLSQTVGLQNYGAFLERDGAGF KGQIKLTGFKNGDIDLSNLSWTYQVGLKGEFLKVYSTGDNEKFEWSELAVDATPSTFTWYKTFFDAPSGVDPVALDLGSMGKGQAWVNGHHIGRYWTVVS PKDGCGSCDYRGAYSSGKCRTNCGNPTQTWYHVPRAWLEASNNLLVVFEETGGNPFEISVKLRSAKVICAQVSESHYPPLRKWSRADLTGGNISRNDMTP EMHLKCQDGHIMSSIEFASYGTPNGSCQKFSRGNCHASNSSSVVTEACQGKNKCDIAISNAVFGDPCRGVIKTLAVEARCISSSNIGYSRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	0	1	BGAL9.1
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.004G057100 [exp]	1.73	0.9177
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	2.82	0.9180
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	5.38	0.9218
AT1G07120			unknown protein		Potri.009G073600 [exp]	5.91	0.9141
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	9.16	0.9103
AT3G05270			Plant protein of unknown funct...		Potri.005G070400 [exp]	9.48	0.8892
					Potri.005G114500 [exp]	10.58	0.9090
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	11.22	0.9074
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	11.31	0.9155
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	20.04	0.9105

Compare expression of checked genes

Potri.017G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.