Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18060 49 / 4e-06 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G62380 49 / 4e-06 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G39820 47 / 1e-05 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G12260 45 / 4e-05 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT2G43000 45 / 5e-05 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G56530 45 / 7e-05 NAC ANAC064 NAC domain containing protein 64 (.1) AT2G24430 44 / 0.0002 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT4G36160 43 / 0.0003 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT4G17980 42 / 0.0005 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G10500 42 / 0.0006 NAC ANAC053 NAC domain containing protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163600 [exp] 501 / 6e-178 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 452 / 2e-158 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028300 [exp] 81 / 2e-16 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 75 / 1e-14 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.001G220500 [exp] 72 / 1e-13 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1) Potri.006G029200 [exp] 69 / 3e-13 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.019G063000 [exp] 69 / 3e-13 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028900 [exp] 68 / 1e-12 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.016G027900 [exp] 66 / 1e-11 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 100 / 6e-23 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10010294 [exp] 71 / 5e-13 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10014342 [exp] 66 / 1e-12 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10008200 [exp] 65 / 6e-12 ND 43 / 6e-05 Lus10009858 [exp] 67 / 7e-12 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10019638 [exp] 64 / 3e-11 AT1G12260 59 / 4e-10 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10008240 [exp] 64 / 7e-11 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10004531 [exp] 63 / 1e-10 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10025078 [exp] 63 / 2e-10 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033279 [exp] 61 / 6e-10 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.017G058100.1 pacid=42814016 polypeptide=Potri.017G058100.1.p locus=Potri.017G058100 ID=Potri.017G058100.1.v4.1 annot-version=v4.1 ATGACAATTTCATCACAAAACCCAGAAACACAAAACCTTGAAATACTAGAGGGTTTTCGATTCCTCCCTGATGATCAAGAATTGGTCCGCTTCTATCTTT ACCCAAAAATCACTAACCCTAATCTCCTCACCACCTTCAATGTTCCCGTTAGAGATTGCCATCTCTTTGGAAACCAAGCCAGAGAACCTTGGCAAATCTG GGACTCCTTCCCCAAACGCCATGGCGAGGATCTATTCTTCTTCACCCAGCATACCAAGAAAGGCAGGTATGTTGTTCGCAAGATCAGCGGTGGCCCTGGA AAATGGCATCAAGAGTATAAAGACCCTCCTTTCGATGTCTCCATCGACCCCAACTGCAAAGTCACTGTCATCAGAAAGGTGTTCACTTACCTCAATCCTA AATCTGACCACAATGGCTCATGGTTCTTGTTTGAGTACAGCCTGCCATCACTTTCTCAACTAACTGTCTTATGTCAATTGAGAAAGAAAGAAGTCCACAA CCCCGAGACAGTCAATCTACAGCGATCAACAACAAAAAAGAGGAAAAGGGTTGCTGACATTGAAAGTGTTGATGATGCCACAAACACCATACTGCAAAAG CCCAGGATTGATGTATTAGACCATCAGCAGCAACATATCATGGGTTTCGATGGGTTAGTAGATACTGTTTCTCAAGTGGAAAACCAGCAGCAGCACTTGC AGCTTGAACCACTCTGTGATAATGGGCTGGGATTCGGCTATTTCGAGTCCTTTTCTTGTGAGGATGAGCAGGACTTTGGAATTTATCTGATGGCTACTGA TTCAGATAGTATATCCACTAGCAATGCTGCACCACCAAGTGTATCTACGTTTAATCCTGAAGAGAACTCGCGGTCACTTGAGTTTATGTCCGACGAAAAA GACGGGGACGCTGCTTCAGCATTAGATCATGATTTCTGTCTTCAGCTACTTGATTTAAGTGGTTGCTATGACGAGGCAGATGGGTTTCCAGCAACTAAAG CAACAGCACGGGCTAGCGCTTATTGGACTCAGGCTACACCAAACCTGGACGAATCCCTCACTTCTGATGCTGTTGATTATTATCTTGAACACGGGGTTTG CGATTCCAGCCCTACCAATTGGTCAGGGTCATTTTCTCAAATGCTGCTAGAAGCACCTACATGCCTGATTCAAGAAAAAGAGATTCATATGGATTCAAAT CCTTCCCTCGTGGAGAGAAACTATTGA
AA sequence Show only first row Show all	>Potri.017G058100.1 pacid=42814016 polypeptide=Potri.017G058100.1.p locus=Potri.017G058100 ID=Potri.017G058100.1.v4.1 annot-version=v4.1 MTISSQNPETQNLEILEGFRFLPDDQELVRFYLYPKITNPNLLTTFNVPVRDCHLFGNQAREPWQIWDSFPKRHGEDLFFFTQHTKKGRYVVRKISGGPG KWHQEYKDPPFDVSIDPNCKVTVIRKVFTYLNPKSDHNGSWFLFEYSLPSLSQLTVLCQLRKKEVHNPETVNLQRSTTKKRKRVADIESVDDATNTILQK PRIDVLDHQQQHIMGFDGLVDTVSQVENQQQHLQLEPLCDNGLGFGYFESFSCEDEQDFGIYLMATDSDSISTSNAAPPSVSTFNPEENSRSLEFMSDEK DGDAASALDHDFCLQLLDLSGCYDEADGFPATKATARASAYWTQATPNLDESLTSDAVDYYLEHGVCDSSPTNWSGSFSQMLLEAPTCLIQEKEIHMDSN PSLVERNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.017G058100 [exp]	0	1
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Potri.002G004800 [exp]	35.36	0.5314	(),CHB903,Pt-SWI3.1,of
AT5G22090			Protein of unknown function (D...		Potri.004G144000 [exp]	59.32	0.5167
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.019G127600 [exp]	114.44	0.4520

Compare expression of checked genes

Potri.017G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.