Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23900 449 / 3e-142 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT1G53650 62 / 4e-10 CID8 CTC-interacting domain 8 (.1.2) AT3G14450 61 / 1e-09 CID9 CTC-interacting domain 9 (.1) AT1G32790 59 / 8e-09 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 56 / 5e-08 CID10 CTC-interacting domain 10 (.1.2) AT5G24440 52 / 1e-06 CID13 CTC-interacting domain 13 (.1) AT4G10610 48 / 2e-05 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G319000 [exp] 627 / 0 AT3G23900 386 / 4e-119 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.001G448800 [exp] 61 / 1e-09 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 61 / 2e-09 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 60 / 2e-09 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.015G005400 [exp] 60 / 3e-09 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 58 / 2e-08 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 57 / 4e-08 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.017G051600 [exp] 54 / 7e-08 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G095800 [exp] 54 / 2e-07 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043159 [exp] 524 / 3e-171 AT3G23900 635 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10032590 [exp] 523 / 5e-171 AT3G23900 647 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10008851 [exp] 60 / 4e-09 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 59 / 1e-08 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10033242 [exp] 57 / 2e-08 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 58 / 3e-08 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10032941 [exp] 50 / 6e-06 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10019359 [exp] 47 / 7e-05 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10002835 [exp] 47 / 9e-05 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 47 / 0.0001 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0159 [poplar] [flax] E-set PF00630 [poplar] [flax] Filamin Filamin/ABP280 repeat
Representative CDS sequence Show only first row Show all	>Potri.017G058300.5 pacid=42812986 polypeptide=Potri.017G058300.5.p locus=Potri.017G058300 ID=Potri.017G058300.5.v4.1 annot-version=v4.1 ATGACAGATCGAAACAACACCACCATCACTGCCGCCGCTACCTCCACCACCAATCACTCAGCTACTAAACCAATATGGATGAAGCAAGCAGAGGAAGCAA AACTAAAAAGCGAGGCAGAAAAAACCGCAGCAGCGAAAGCTGCATTCGACGCGACCTTCAAAGTATTATCAGACAAGGCTGAGAAGCCCGCGGATTCAGA TTCCGAGGAGGAAGATGCAGAGGAGGATTTGGCCAATAAACCAGTGGGACCAGTTGACCCCAATAAGTGCACGGCGGCAGGGGGTGGCATTGCCGGTGGG ACCGCGTGTGCACCTGCCACGTTTATGGTTGTTACTAAGGATGCGGATGGGAGGAAAGTTCCGAATGGAGGCGCGGTGATTAAGGTTAGGGTTTCACCGG GAGTGGGAGTTGGGGGAACGGAGCAAGAAGGGAATGTGAAGGATATGGGAGATGGGACATACACGGTTACATATGTGGTGCCGAAAAGAGGGAATTATAT GGTTACTATTGAGTGTAATGGGAAAGCTATTATGGGGAGTCCTTTCCCTGTTTTCTTTAGTGCAGGCACTTCGACTGGAGGGTTGCTGGGTATGGCTCCT ACAACAACATTTCCAAACCTTGTGAACCAGACCATGCCTAACATGCCAAATTACTCGGCCAACATTTCTGGGGCATTCCCTGCATTACTAGGAATGACTC CAGGCATTACTTCCAGTGCTTCAGGTGGTGCTATTTTGCCTGGAGCTGGAGCATCTCTTGGGGAAGTTTGTCGAGAGTACCTTTATGGTCGGTGTGCAAA AACTGATTGCAAGCTGAGTCACCCTCCACAGAGCTTACTGATGACTTTGTTAGCCCCAACAACCTCAATGGGGACTCTTAGTCAGGTGCCTATGGCGCCT TCTGCAGCTGCAATGGCTGCCGCCCAGGCTATTGTTGCTGCCAAAGCTCTTCAAGCTCATGCTGCTCAGTTGCAAGCGCAAGCTCGGTCAGCCAAAGATT CATCTGGATCACCTGACAAAGCTCGGAAGGAGGATGCACTGAAGAAAACACTCCACGTTAGCAATCTCAGCCCGCTTCTGACAGTGGAACAGCTGAAACA ACTGTTTAGCTTTTGTGGCACAGTTGTTGAATGTACCATTGCTGATTCAAAACACTCTGCTTACATAGAATACTCGAAACCTGAAGAAGCAACTGCTGCT TTAGCATTGAACAATATGGATGTTGGGGGTCGGCCTTTGAATGTTGAGACGGCTAAATCTCTTCCTCAGAAACCTATTTTGAACTCTTCCTTTGCTTCAT CTTCTCTGCCGATGATGATGCAGCAAGCAGTTGCCATGCAACAGATGCAATTTCAACAGGCTTTGCTTATGCAGCAAACTATGACTGCACAGCAGGCAGC TAACAAAGCTGCAACAATGAAGTCGGCAACAGAGTTAGCAGCAGCTAGAGCTGCAGAAATAAGTAAGAAGTTAAAAGATGATGGGCTTGTCACTGGAGAA GGGGAAACAAAAGCAGAATCCAAGTCACCACCCCCGCCTCGAGCAAGGTCCAGATCCAAGTCGAGATCACCAATTAATTACCGAAGAAGAATGAGGTCAC CTTCTTACTCCCCCCCATCCCGCCACAATAGAGACCGTAGATCTAGGTCCCCTGTGAGATTTCGCTATCACTCAAGGTATAATTACGAAAGACGATCATA TAGAGATAGAGATAGTAGAGATGATGGTGATAGAACTAGAAGGCGGGAATTGGATAGATCCCGTGATCATCATTCACCTGTTTCAAGGAGAAATAGGAGC AGGAGTGCAAGCCCTCGAACAAGAAAATCCTACAGAGCTGATTCAGGCTCGCCAAAACATCGCCAAGAAAGTTCAGCTCATAGATCAAGAAAAGCATCAG ACAGTGGTTCAAGATCACCTAGGCATCATGGAGGAAGTCGATCATCCCCAAGGAACAACCCAGATAGCAAGCTCAGGTACAGAAGGCGCTCACGCTCTAG GTCCAAATCGGTGGAGGAGGCCAATGACAAAGTGGATGAAATCCGAGAAAAAAAGTCTAAGCAGCATGAGAGGAGGTCTAGGTCATTATCTGTGGAGCTT AAACACCATGGAAGGAGGCCATCCCCTAGAAGTTCAAATGAAGATGACTCGAAGCACAGAAGTCGGTCCAGGTCAAAATCTGTGGAAGTTAAACGCCATT CCAATGAGAAAGTAGACAAAACTGGGGATGGAAAGCTGAAGCACCGTCATAGGAGGTCCAGGTCAAAATCTGTTGATGATAGGCATCATTACAAAGAGAG GGGAAATGAAACCAGGGATAAAAAAACAAAGCATCAAGATAGAGGGCGGTCTAGATCAATAACTGCAGAGGGAAAGCATCACAGAAGTAGGTCATCCCCA AGAGGTAGGGATGGGAGCAAGTCAAAGCACAGACGGCACTCCAGGTCAATATCTCCAGAAGGCAAGCGGCGGTCCAGTCACAGGGTAGATCAAAATAAAG ATGAAAAGTCTAAGCACCGCCATAGACGAAGGTCACCATCCGCTGAAGGTAAACACGGCAGATCTCCAAGAAGTTCAGAGGAAAATAAATCAAAACACAG GAGGCGCCCTAGGTCAAAATCTGCCGAACGTAAACGTCATTCAAATGATGAGAAGGATATTAGAAGAGGGGAAAATGAGACTCATCATGAGCATGGATCA GACAAAACAGAAGATGCCAATGAGGAAAAAAAATATTTTATGAATGAAGAAATGGTGGATTTAAAACATAAAGGTTGTGATTCAAAGGAACTGGTGGAAG ACATGGTAACGGGGAGCAATGGTTTGCCAAATTCAAGCAATGAAGAACCATAG
AA sequence Show only first row Show all	>Potri.017G058300.5 pacid=42812986 polypeptide=Potri.017G058300.5.p locus=Potri.017G058300 ID=Potri.017G058300.5.v4.1 annot-version=v4.1 MTDRNNTTITAAATSTTNHSATKPIWMKQAEEAKLKSEAEKTAAAKAAFDATFKVLSDKAEKPADSDSEEEDAEEDLANKPVGPVDPNKCTAAGGGIAGG TACAPATFMVVTKDADGRKVPNGGAVIKVRVSPGVGVGGTEQEGNVKDMGDGTYTVTYVVPKRGNYMVTIECNGKAIMGSPFPVFFSAGTSTGGLLGMAP TTTFPNLVNQTMPNMPNYSANISGAFPALLGMTPGITSSASGGAILPGAGASLGEVCREYLYGRCAKTDCKLSHPPQSLLMTLLAPTTSMGTLSQVPMAP SAAAMAAAQAIVAAKALQAHAAQLQAQARSAKDSSGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECTIADSKHSAYIEYSKPEEATAA LALNNMDVGGRPLNVETAKSLPQKPILNSSFASSSLPMMMQQAVAMQQMQFQQALLMQQTMTAQQAANKAATMKSATELAAARAAEISKKLKDDGLVTGE GETKAESKSPPPPRARSRSKSRSPINYRRRMRSPSYSPPSRHNRDRRSRSPVRFRYHSRYNYERRSYRDRDSRDDGDRTRRRELDRSRDHHSPVSRRNRS RSASPRTRKSYRADSGSPKHRQESSAHRSRKASDSGSRSPRHHGGSRSSPRNNPDSKLRYRRRSRSRSKSVEEANDKVDEIREKKSKQHERRSRSLSVEL KHHGRRPSPRSSNEDDSKHRSRSRSKSVEVKRHSNEKVDKTGDGKLKHRHRRSRSKSVDDRHHYKERGNETRDKKTKHQDRGRSRSITAEGKHHRSRSSP RGRDGSKSKHRRHSRSISPEGKRRSSHRVDQNKDEKSKHRHRRRSPSAEGKHGRSPRSSEENKSKHRRRPRSKSAERKRHSNDEKDIRRGENETHHEHGS DKTEDANEEKKYFMNEEMVDLKHKGCDSKELVEDMVTGSNGLPNSSNEEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	0	1
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	1.41	0.8544
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	4.24	0.8342
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	5.47	0.8083	CHR923
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	5.74	0.8242
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	6.92	0.7739
AT3G22430			unknown protein		Potri.010G235700 [exp]	7.41	0.8021
AT3G04160			unknown protein		Potri.019G029400 [exp]	8.24	0.8186
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	9.16	0.8077
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	9.48	0.8057
AT5G04610			S-adenosyl-L-methionine-depend...		Potri.010G234600 [exp]	9.89	0.7229

Compare expression of checked genes

Potri.017G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.