Plant FIBer expression Database

Potri.017G058500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43490 85 / 5e-19 unknown protein
AT5G48610 50 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G319500
[exp]
573 / 0 AT5G43490 71 / 6e-14 unknown protein
Potri.001G319600
[exp]
543 / 0 AT5G43490 71 / 6e-14 unknown protein
Potri.017G058600
[exp]
412 / 9e-142 AT5G43490 71 / 2e-14 unknown protein
Potri.017G058701
[exp]
78 / 2e-16 AT5G48610 52 / 4e-08 unknown protein
Potri.002G019200
[exp]
51 / 6e-07 AT1G20100 71 / 6e-14 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002352
[exp]
115 / 9e-27 AT5G43490 78 / 2e-16 unknown protein
Lus10003153
[exp]
113 / 3e-26 AT5G43490 80 / 4e-17 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G058500.1 pacid=42813074 polypeptide=Potri.017G058500.1.p locus=Potri.017G058500 ID=Potri.017G058500.1.v4.1 annot-version=v4.1
ATGTCGCGTTGCTTTCCATTTCCACCACCAGGATATGAAAAGAAGGCCAGGAGTGATGATTTTGACCTACTAAAAAAGGAGGACAAAGAGAAGAAGAACA
AGGAGAAGAAAGATAAAGAAAGGAGACAAGATAAAGAAAAGAAGGAGAAAGATAGGAGTGATGGAAAGCATAGGGATAAGAAAGACAAAAAGGAAAAGCA
TAGAGAGAAAAAGGAGAAGGATAGAGATAAGGATAAAGACAAAAGTAGTGCCTCAGATGAAAAGAGACTTCTGGGGCAAGCTATGCTTAACAATGGAGGA
GACAGAGCCTCAGATGAAAGGAAAGTTCCTGGGCAATCTAATGGTGGAGAGGTGTGCACTCAGAAGAGGAAGGAAAGGGATCTGGATAAAAATAGTATCT
CTGGTGACAAAAAAACTGCTGGACAGTTTTCAGGTTATAACGGTCAGAAGCTCATTCAAAACAGCAATTTGTCTCACCAACCTAAGGAGTCCAAATTTGT
ACAACAGCTGGGCAAGAGGGCCAGAGAGGAAGACAGAAAGCAGTTCTTTGAGAAGTTCACTGATACAGATGCAAAAAGAGATGAGGGAATGGTTAGACTG
GTGGCAAAGGCCCCTGGCAATTGGGTTGACGGAAAAGAGAAGAACAAGAGAGATGATGATAGAAAGGTGGATGGGCAAGGAATCAGGGATGAGGCAAGAT
TTACTGCAAGTGCTCAGAGTATTTCTGGAACATTCAAGGCTAAAATTGATGGAATGCCAAGATCACTGGAGAAAGACAATGAGAAGAAGATGGAAGGGAA
AGATAAGACCAAACAAAAGGAAAGCCAGGAAAAACGTAAAAATAAAGAGAAAAAAAGCAAAGAGAAGGATAAAGTCAGGGATAAAGAGAAGAAAAAAGAG
GAGAAAGCTAAGGAGAAAAGCGAGCATAAGATGAAAGAGCCAGTTAAATTGAAGGAAAGCAATATGTTTGACCTTGTAGGTGACCATACTGTAAAAAGCT
CACATCTTCTCAAGGAGAGCACTAATAGTGTTGTTGGTGATGTAAAGATCAAGAAACGAAAGGACTCTGACACAAATGGACTTTTGCATGCTGATGATAT
TAAGCCTAATAAGTTGCCAAGGCCTACTTCCTTGCCTGTATCAGCTGAGAATGGAAGAATGTTGGGAACTTGCAAAATTCCCACCGCAGTTATACAAGGT
AGGCAGGAGGCTGTCAATAGCAATAAGGTGGATAGTAAAGAACAGAAGATAAATGGTTTGATAGAAGCTCTAGCTCCACCCATCACCTCAACGACCCATC
CGCAATCAATCTCTTTAACAAAGTCTTTAACAAAACCTTCACATTCAATTGCACAAACTGATCAAATAGCCGAAGTGTCTAGGAAACAACCCCATCCAGA
TTCCAAGTACCTTCTTGAGGTGCTTACAGTACCCAAAATGGAAGAGCTGCCGGATTTTGAGGACCAAGAATGGCTATTTCAGAGTACTAATTTCCCAACA
AAGAAGCTCCAGGTTGGGTTTTCAGGGATTGACGAGACACAACAGGTTTGGTCAGAAGCTCTGCAGATTGGGTCGGCTGATGTTTATGCACTGCCATACG
TTATTCCCTATTGA
AA sequence
>Potri.017G058500.1 pacid=42813074 polypeptide=Potri.017G058500.1.p locus=Potri.017G058500 ID=Potri.017G058500.1.v4.1 annot-version=v4.1
MSRCFPFPPPGYEKKARSDDFDLLKKEDKEKKNKEKKDKERRQDKEKKEKDRSDGKHRDKKDKKEKHREKKEKDRDKDKDKSSASDEKRLLGQAMLNNGG
DRASDERKVPGQSNGGEVCTQKRKERDLDKNSISGDKKTAGQFSGYNGQKLIQNSNLSHQPKESKFVQQLGKRAREEDRKQFFEKFTDTDAKRDEGMVRL
VAKAPGNWVDGKEKNKRDDDRKVDGQGIRDEARFTASAQSISGTFKAKIDGMPRSLEKDNEKKMEGKDKTKQKESQEKRKNKEKKSKEKDKVRDKEKKKE
EKAKEKSEHKMKEPVKLKESNMFDLVGDHTVKSSHLLKESTNSVVGDVKIKKRKDSDTNGLLHADDIKPNKLPRPTSLPVSAENGRMLGTCKIPTAVIQG
RQEAVNSNKVDSKEQKINGLIEALAPPITSTTHPQSISLTKSLTKPSHSIAQTDQIAEVSRKQPHPDSKYLLEVLTVPKMEELPDFEDQEWLFQSTNFPT
KKLQVGFSGIDETQQVWSEALQIGSADVYALPYVIPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43490 unknown protein Potri.017G058500
[exp]
0 1
AT5G41020 MYB myb family transcription facto... Potri.015G095000
[exp]
1.73 0.9712
AT5G48610 unknown protein Potri.017G058701
[exp]
2.00 0.9703
AT1G68720 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADEN... Potri.010G132600
[exp]
2.00 0.9605
AT2G03150 EMB1579 embryo defective 1579, ATP/GTP... Potri.010G166100
[exp]
2.82 0.9530
AT1G76810 eukaryotic translation initiat... Potri.012G039200
[exp]
3.00 0.9655
AT3G05670 RING/U-box protein (.1) Potri.013G011400
[exp]
3.74 0.9534
AT5G43490 unknown protein Potri.001G319500
[exp]
5.00 0.9582
AT1G22310 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.... Potri.005G164100
[exp]
6.00 0.9540
AT1G49520 SWIB complex BAF60b domain-con... Potri.004G145200
[exp]
6.16 0.9320
AT5G43490 unknown protein Potri.017G058600
[exp]
6.32 0.9499

Potri.017G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.