Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23820 724 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G02000 578 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 572 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 561 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 548 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 544 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 97 / 6e-22 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 95 / 3e-21 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 90 / 2e-19 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT4G10960 90 / 2e-19 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320000 [exp] 854 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.014G068400 [exp] 583 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 579 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 530 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 528 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G178500 [exp] 528 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 519 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 176 / 2e-53 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 102 / 5e-24 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022552 [exp] 714 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10016640 [exp] 709 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10030281 [exp] 582 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 581 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 578 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 577 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 542 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10032391 [exp] 533 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10015496 [exp] 530 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10031127 [exp] 522 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.017G059100.1 pacid=42813632 polypeptide=Potri.017G059100.1.p locus=Potri.017G059100 ID=Potri.017G059100.1.v4.1 annot-version=v4.1 ATGGCTTCACCGCCCCACACAAGCAAGACCCTAAAGCTAGAGCGTTACAATAGCTACCTTCGCAGGCTACATAGCACAAAGGTGCTGAATGCCTCTTCAA AACTTATCTTCCGTGTCACGCTTCTTATTGCTCTTGTCTTGATTCTCTTTTTTACCCTTAATTACCCTCCACTCTCTGATAAAAATCCCAATCATGCCCA TCTCCACCACCACAACTTCCTTTCCGCTGCCCTTTTCACCTCCTCCGCTGGCGGTGATGCCTGGGAGAAACAAGTCCGCCACTCCTCCACTCCAAAAAAG CCAAATGGGCTCTCGGTTTTAGTAACTGGGGCAGCTGGTTTTGTTGGCTCTCATTGCTCTATTGCTCTAAAGAAAAGAGGTGATGGGGTTCTTGGTTTAG ACAACTTCAACAGTTACTATGACCCTTCACTTAAAAGAGCAAGACAAAAGCTTCTATTGAAAAACCAAGTTTTCATTGTTGAAGGTGACTTGAACGATGC CTCATTGTTAACAAAGCTTTTTGATGTTGTTCCCTTCACGCATATACTCCATCTTGCAGCACAAGCTGGGGTTCGTTATGCCATGCAAAACCCACAATCC TACGTGAGTTCAAACATTGCAGGTTTTGTCAATCTTCTTGAAGTTGCAAAAACTGCAAATCCACAGCCGGCTATTGTGTGGGCATCTTCAAGCTCAGTTT ATGGGTTAAACACTCAAGTTCCTTTCTCTGAATTGGATAGAACAGACCAACCAGCAAGTCTTTATGCAGCTACCAAGAAAGCAGGAGAAGAAATTGCACA TACTTATAATCATATTTATGGTCTTTCACTCACTGGATTAAGATTCTTTACAGTCTATGGTCCATGGGGTAGACCTGATATGGCTTATTTCTTTTTCACG AAAGATATCTTGCAAGGCAAACCAATTGATGTGTATCAAACTCAAGATAAGAAGCAAGTAGCTCGTGACTTCACTTATATTGATGATGTTGTCAAAGGGT GTCTAGGGGCTTTGGACACGGCGGAGAAAAGCACAGGAAGCGGTGGCAAGAAGAAAGGACCTGCCCAATTGAGAGTTTACAATCTTGGCAACACCTCGCC GGTTCCTGTTGGGAAATTGGTGTCAATATTAGAAGGCTTACTGCGTACAAAAGCAAGGAAGCATGTGATCAAGATGCCAAGAAATGGGGATGTGCCTTAT ACACATGCTAATGTCACTCTGGCATACAGGGATTTTGGGTACAAACCTACCACAGATTTAGCTACTGGGTTGAGAAAATTTGTAAAGTGGTACGTTGATT ATTATGGGATTCAGACAAGGGTAAAGAAGGATAGTGATATCAACAGTGAGCATCCCGAGGAATCAGTTTAA
AA sequence Show only first row Show all	>Potri.017G059100.1 pacid=42813632 polypeptide=Potri.017G059100.1.p locus=Potri.017G059100 ID=Potri.017G059100.1.v4.1 annot-version=v4.1 MASPPHTSKTLKLERYNSYLRRLHSTKVLNASSKLIFRVTLLIALVLILFFTLNYPPLSDKNPNHAHLHHHNFLSAALFTSSAGGDAWEKQVRHSSTPKK PNGLSVLVTGAAGFVGSHCSIALKKRGDGVLGLDNFNSYYDPSLKRARQKLLLKNQVFIVEGDLNDASLLTKLFDVVPFTHILHLAAQAGVRYAMQNPQS YVSSNIAGFVNLLEVAKTANPQPAIVWASSSSVYGLNTQVPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT KDILQGKPIDVYQTQDKKQVARDFTYIDDVVKGCLGALDTAEKSTGSGGKKKGPAQLRVYNLGNTSPVPVGKLVSILEGLLRTKARKHVIKMPRNGDVPY THANVTLAYRDFGYKPTTDLATGLRKFVKWYVDYYGIQTRVKKDSDINSEHPEESV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Potri.017G059100 [exp]	0	1
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Potri.013G047200 [exp]	2.82	0.7511	Pt-CKI1.1
AT3G27050			unknown protein		Potri.001G329600 [exp]	5.29	0.7587
AT3G51990			Protein kinase superfamily pro...		Potri.009G055200 [exp]	6.63	0.7289
AT3G18050			unknown protein		Potri.012G049000 [exp]	10.67	0.7808
AT1G22610			C2 calcium/lipid-binding plant...		Potri.019G080000 [exp]	13.41	0.6910
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	27.71	0.7574
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	30.74	0.6777
AT3G11210			SGNH hydrolase-type esterase s...		Potri.008G068000 [exp]	38.79	0.6299
AT5G35740			Carbohydrate-binding X8 domain...		Potri.014G164600 [exp]	43.31	0.7024
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	46.49	0.7130

Compare expression of checked genes

Potri.017G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.