Plant FIBer expression Database

Pt-SAHH.2 (Potri.017G059400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-SAHH.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13940 917 / 0 MEE58, EMB1395, SAHH1, HOG1, ATSAHH1 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
AT3G23810 906 / 0 SAHH2, ATSAHH2 S-adenosyl-l-homocysteine (SAH) hydrolase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G320500
[exp]
942 / 0 AT4G13940 923 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043156
[exp]
910 / 0 AT4G13940 907 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Lus10032593
[exp]
890 / 0 AT4G13940 884 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Lus10016645
[exp]
578 / 0 AT4G13940 576 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Lus10022560
[exp]
576 / 0 AT4G13940 564 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Lus10022559
[exp]
0 / 1 AT4G13940 188 / 7e-65 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CL0325 Form_Glyc_dh PF05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase
Representative CDS sequence
>Potri.017G059400.1 pacid=42814520 polypeptide=Potri.017G059400.1.p locus=Potri.017G059400 ID=Potri.017G059400.1.v4.1 annot-version=v4.1
ATGGCTTTGCTTGTCGAGAAAACAACAAGCGGTCGTGCGTACAAGGTGAAGGACTTGTCCCAGGCTGACTTCGGCCGTCTCGAAATTGAGCTGGCCGAAG
TTGAAATGCCTGGATTGATGTCCTGCCGCGCTGAATTCGGCCCCTCACAACCATTCAAGGGAGCCAAGATTACCGGATCTCTTCACATGACTATCCAAAC
CGCTGTCTTGATCGAAACCTTGACCGCCTTGGGTGCTGAGGTTCGTTGGTGTTCTTGCAATATCTTCTCCACTCAAGATCATGCCGCCGCAGCTATTGCA
CGTGACTCAGCTGCTGTTTTTGCCTGGAAAGGGGAGACCCTCCAGGAGTATTGGTGGTGCACTGAGAGAGCTCTTGATTGGGGCCCGGGTGGTGGTCCTG
ATTTGATTGTTGATGATGGTGGTGATGCTACTCTCTTGATTCACGAGGGTGTGAAAGCTGAGGAGATTTATGAGAAGACTGGTGTTTTGCCAGATCCAGC
TTCGACTGATAATGTAGAGTTTCAGCTTGTTTTGACAATTATTAGAGATGGGTTGAAGAGTGATCCCATGAAGTATCACAAGATGAAGGAAAGATTGGTT
GGTGTTTCAGAGGAAACCACAACTGGTGTTAAGAGATTGTATCAAATGCAGGCTAATGGGACTTTGCTTTTCCCTGCCATTAATGTTAACGACTCTGTGA
CCAAGAGCAAGTTTGATAACTTGTATGGATGCCGTCACTCTCTCCCTGATGGTTTGATGAGAGCTACTGATGTCATGATTGCCGGAAAGGTTGCTGTGGT
CTGTGGTTATGGTGATGTTGGCAAGGGCTGTGCAGCTGCCATGAAGCAAGCTGGAGCTCGTGTGATCGTGACTGAGATTGATCCCATTTGCGCTCTTCAG
GCTCTCATGGAGGGTCTCCAGGTCTTGACCCTTGAAGATGTTGTCTCCGAGGCTGATATCTTTGTGACCACCACCGGTAACAAGGACATCATCATGGTTG
ACCACATGAGGAAGATGAAGAACAATGCCATTGTCTGCAACATTGGTCACTTCGATAATGAAATCGACATGCACGGACTTGAGACCTTCCCTGGTGTGAA
ACGCATCACCATCAAGCCCCAAACTGATAGGTGGGTTTTCCCTGATACCAAATCGGGCATCCTTGTCCTGGCCGAGGGACGTCTCATGAACCTGGGTTGT
GCCACTGGTCACCCCAGTTTTGTGATGTCCTGCTCATTCACCAACCAGGTGATTGCTCAGCTTGAGCTGTGGAACGAGAAGACATCCGGCAAGTATGAGA
AGAAGGTCTATGTTTTGCCCAAGCACCTTGATGAGAAGGTTGCTTCCCTTCACCTTGGCAAGCTTGGAGCCAGGCTCACCAAGCTCTCCAAGGACCAGGC
AGACTACATCAACGTTCCAGTTGAGGGTCCCTACAAGCCTGCTCAGTACAGGTACTGA
AA sequence
>Potri.017G059400.1 pacid=42814520 polypeptide=Potri.017G059400.1.p locus=Potri.017G059400 ID=Potri.017G059400.1.v4.1 annot-version=v4.1
MALLVEKTTSGRAYKVKDLSQADFGRLEIELAEVEMPGLMSCRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIA
RDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGVLPDPASTDNVEFQLVLTIIRDGLKSDPMKYHKMKERLV
GVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAAMKQAGARVIVTEIDPICALQ
ALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMHGLETFPGVKRITIKPQTDRWVFPDTKSGILVLAEGRLMNLGC
ATGHPSFVMSCSFTNQVIAQLELWNEKTSGKYEKKVYVLPKHLDEKVASLHLGKLGARLTKLSKDQADYINVPVEGPYKPAQYRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Potri.017G059400
[exp]
0 1 Pt-SAHH.2
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G320500
[exp]
1.00 0.9560 SAHH.1
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.009G152800
[exp]
2.82 0.9554
AT2G44160 MTHFR2 methylenetetrahydrofolate redu... Potri.017G000300
[exp]
3.87 0.9457 Pt-MTHFR1.1,MTHFR2
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.008G099300
[exp]
4.00 0.9115 AdoMet1,SAMS.2
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.019G038268
[exp]
4.89 0.9418
AT2G35120 Single hybrid motif superfamil... Potri.012G123700
[exp]
5.47 0.9347 gdcH1
AT2G36880 MAT3 methionine adenosyltransferase... Potri.006G123200
[exp]
8.48 0.9240 AdoMet6
AT2G47360 unknown protein Potri.014G119900
[exp]
10.95 0.9300
AT1G11860 Glycine cleavage T-protein fam... Potri.004G009600
[exp]
12.12 0.9028 GDCST.2
AT4G13930 SHM4 serine hydroxymethyltransferas... Potri.001G320400
[exp]
12.24 0.9124

Potri.017G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.