Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSFA5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13980 499 / 7e-175 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT1G32330 216 / 2e-64 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 212 / 6e-63 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 209 / 5e-62 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 205 / 3e-60 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 194 / 2e-57 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT4G18880 186 / 6e-54 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT3G22830 186 / 9e-54 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 185 / 2e-53 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT5G45710 176 / 1e-50 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320900 [exp] 827 / 0 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.001G138900 [exp] 232 / 3e-70 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.011G071700 [exp] 221 / 3e-67 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 220 / 9e-67 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.003G095000 [exp] 222 / 2e-66 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.014G141400 [exp] 208 / 8e-62 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.005G214800 [exp] 198 / 5e-59 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 200 / 2e-58 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G115700 [exp] 198 / 2e-57 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016634 [exp] 538 / 0 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10022546 [exp] 528 / 0 AT4G13980 440 / 2e-151 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10030956 [exp] 227 / 1e-68 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 222 / 1e-66 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10011065 [exp] 218 / 2e-65 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 218 / 4e-65 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10029269 [exp] 205 / 9e-63 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10007318 [exp] 207 / 1e-61 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10040911 [exp] 199 / 5e-58 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10006618 [exp] 192 / 3e-56 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.017G059600.1 pacid=42813817 polypeptide=Potri.017G059600.1.p locus=Potri.017G059600 ID=Potri.017G059600.1.v4.1 annot-version=v4.1 ATGGAAGCGGGATCATCGCCATCCGCCGCCGCCGGCGGAGGACCCGCGCCGTTCTTGATAAAGACATATGACATGGTGGATGATTCATCGACTGACGAGA TTGTGTCTTGGAGTTCGAACAAAAACAGCTTTGTCGTATGGAACCCTCCAGAATTCGCCAGATTGTTGCTTCCTACCTTTTTCAAGCACAATAATTTCTC TAGCTTTATCAGACAATTAAATACCTATGGATTTAGAAAGATTGATCCTGAGAAATGGGAATTTGCCAATGAAGATTTTTTGAAAGATCAGAAGCATCTG CTTAAGAACATCCACAGAAGAAAACCAATCCACAGTCACAGCAACCCTCAAGGTTCTTTAGTGGATCAAGAAAGAGCAGCATATGAGGAAGAAATAGACA AGCTTTCACGTCATAAAGCCAAACTCGAGGCAAGTATTCTAGGGTTTTCACAGCAGCGGTCATCTGCAAAGCTTCATGTGGAAGATCTAACACAGAGGAT AGATACTATGCAGCAGAGGCAGGAAAAGTTGCTGTCGTTCTTAGAGAAGGCTGTTCAAAACCCTGCTTTTGTTGAACATCTTGCTTGTAAGATTGAATCT ATGGATTTTTCAGCATATAGCAAGAAGAGACGACTGCCTCAAGTTGATCACTCAATGCCAACTGCAGAAAATAGTTTTGTCGAAAATCACTGTAGTTCTA GGCCCGAGTCTAATGTCATCTATCAAGATTTCTCAAATAAGTTGAGGCTGGAATTATCACCAGCTGTTTCAGATATTAATTTGATTTCACGTAGTACGCA GAGCTCCAATGAAGACGGGGGAAGCCCACAAAGGAAAATATCTGAAGGGAATCCAAAAGATGGACCTACTAGGACATCAGGTTTACTATTGGCACCTGAA ACATTGGAACTTTCGGATACTGGGACATCGTATACATTTAAAGTGAATCCTGCTGTCCCAAGAGACTTACCAGCAAGTGGGAGCCAAGCACAACATTCAC TGCAGGCGAATTTGACTTCCAATGAAGAAGTTGATGGCCTTATTTCCTGTCAATTGAACCTAACTCTGGCATCTTCTGCATTGCAAGTCAACAAAAATCC TTATTTAGCTAGGATGCCTCCACTACGTCAGGAAATTGTCAAATCTCCAGAATCAAGGTTTAACGAGAGTAACAAAGATTCTGACATGCGAGTTATTCAG AACATGAATCTGGGTAACGAGGGCACAACTTTATCCTCCTCCCAGGAGATCCCAAATAACAGTCAAGTGCCTGCATCAGCTCCAGCTAGAGTCAATGATG GTTTCTGGGAACAGTTCCTAACTGAAAGACCGGGCTCTTATGAAAATGAAGAGGCAAGTTCTAATTACCGAGCAAACTCTTATGATGAGCAGGATGAAAG AAGGTTAGGTTTCGGAGTGCCAAGAAATGCTAAAAACATGGAGCAGCTCTCTCTATGA
AA sequence Show only first row Show all	>Potri.017G059600.1 pacid=42813817 polypeptide=Potri.017G059600.1.p locus=Potri.017G059600 ID=Potri.017G059600.1.v4.1 annot-version=v4.1 MEAGSSPSAAAGGGPAPFLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEKWEFANEDFLKDQKHL LKNIHRRKPIHSHSNPQGSLVDQERAAYEEEIDKLSRHKAKLEASILGFSQQRSSAKLHVEDLTQRIDTMQQRQEKLLSFLEKAVQNPAFVEHLACKIES MDFSAYSKKRRLPQVDHSMPTAENSFVENHCSSRPESNVIYQDFSNKLRLELSPAVSDINLISRSTQSSNEDGGSPQRKISEGNPKDGPTRTSGLLLAPE TLELSDTGTSYTFKVNPAVPRDLPASGSQAQHSLQANLTSNEEVDGLISCQLNLTLASSALQVNKNPYLARMPPLRQEIVKSPESRFNESNKDSDMRVIQ NMNLGNEGTTLSSSQEIPNNSQVPASAPARVNDGFWEQFLTERPGSYENEEASSNYRANSYDEQDERRLGFGVPRNAKNMEQLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	0	1	Pt-HSFA5.2
					Potri.006G063600 [exp]	2.00	0.8776
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	3.00	0.8648
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.003G115800 [exp]	5.83	0.8334	KEU.1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	7.48	0.8684
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	7.74	0.8618
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	8.48	0.8454
AT4G36988		CPuORF49	conserved peptide upstream ope...		Potri.007G043850 [exp]	15.00	0.8091
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	16.73	0.8302
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.001G320900 [exp]	17.17	0.8004	Pt-HSFA5.1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.009G056400 [exp]	18.73	0.8137

Compare expression of checked genes

Potri.017G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.