Plant FIBer expression Database

SBP.2 (Potri.017G060000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SBP.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14030 806 / 0 SBP1 selenium-binding protein 1 (.1.2)
AT4G14040 799 / 0 SBP2, EDA38 EMBRYO SAC DEVELOPMENT ARREST 38, selenium-binding protein 2 (.1)
AT3G23800 777 / 0 SBP3 selenium-binding protein 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G321600
[exp]
934 / 0 AT4G14030 826 / 0.0 selenium-binding protein 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037336
[exp]
847 / 0 AT4G14030 815 / 0.0 selenium-binding protein 1 (.1.2)
Lus10035760
[exp]
843 / 0 AT4G14030 808 / 0.0 selenium-binding protein 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF05694 SBP56 56kDa selenium binding protein (SBP56)
Representative CDS sequence
>Potri.017G060000.3 pacid=42814595 polypeptide=Potri.017G060000.3.p locus=Potri.017G060000 ID=Potri.017G060000.3.v4.1 annot-version=v4.1
ATGGCTACAGGCACAGAAGTGGTGAGTGATAATGGACATGGATGCTGCAAGAAAGGACCAGGTTATGCGACACCACTTGAAGCAATGTCTGGTCCGAGGG
AGTCACTTCTCTATGTCACTTGTGTTTACTCTGGAACGGGAATAGAGAAGCCTGATTATCTAGCCACAGTGGATGTTGATCCCAACTCACCTACTTATTC
AAAAGTTATCCACAGGCTACCTATGCCAAACGTAGGAGATGAACTGCATCATACAGGATGGAATTCTTGCAGCTCTTGCCATGGAGATCCATCTGCAGCA
AGGCGTTATCTGGTCCTTCCTTCCTTGATATCTGGTCGCATATATGCAATTGACACCCTAAAAGATCCAAGGGCTCCCTCATTGCATAAAGTTGTTGAGC
CTGCAGATATTGTAAATAAGACAGGATTAGCATATCCACACACATCCCATTGCCTTGCTTCTGGAGATGTCATGGTATCATGCCTTGGAGATAAAGATGG
AAATGCAGAGGGAAATGGATTTCTTCTACTCGATTCAGAATTCAATGTAAAGGGGAGGTGGGAGAAACCAGGGCACAGTCCAACGTTTGGTTATGATTTC
TGGTACCAACCTCGACACAACATAATGATTAGCTCATCATGGGGAGCTCCTGCAGCCTTCACTAAAGGCTTCAATCTGCAACATGTGGCAGATGGTCTTT
ACGGGAGGCATTTGAATGTCTACAGTTGGCCCAATGGTGAACTGAAGCAGACATTGGATCTTGGCGATACAGGACTCTTGCCATTGGAGATAAGGTTTCT
GCACGATCCTTCTAAAGATTCAGGGTTTGTTGGGTGTGCCTTAACAAGTAACATGGTTAGGTTTTTCAAGACCCCTGATGGATCATGGAGCCATGAGGTG
GCAATATCAGTGAAACCATTGAAGGTGCAAAACTGGATTCTCCCAGAAATGCCAGGGCTTGTAACTGATTTTCTCATCTCTCTTGACGATCGGTTTCTGT
ACTTTGTCAACTGGCTGCATGGAGATGTCCGACAGTACAGCATTGAGGACCCTGAAAAACCTGTCCTGAAAGGACAAGTTTGGGTTGGGGGGCTGATCCA
AAAAGGAAGCTCTGTGGTGGCTGAGGGTGAAGATGGAAAAACCTGGCAGTATGATGTTCCTGAAATCCAGGGACATCGATTGAGGGGCGGGCCTCAAATG
ATTCAGCTGAGTTTAGACGGGAAGCGACTTTATGTCACCAACTCACTTTTCAGTACCTGGGATCGTCAGTTTTATCCGGAACTTATGGAGAAAGGATCTC
ACATGTTACAGATAGATGTTGACACTGAGAAGGGTGGTCTTGCAATAAATCCAAACTATTTTGTGGACTTTGCAGCTGAACCTGATGGTCCTTCCCTAGC
TCACGAGATGAGATATCCAGGTGGTGACTGCACATCAGATATATGGATCTAA
AA sequence
>Potri.017G060000.3 pacid=42814595 polypeptide=Potri.017G060000.3.p locus=Potri.017G060000 ID=Potri.017G060000.3.v4.1 annot-version=v4.1
MATGTEVVSDNGHGCCKKGPGYATPLEAMSGPRESLLYVTCVYSGTGIEKPDYLATVDVDPNSPTYSKVIHRLPMPNVGDELHHTGWNSCSSCHGDPSAA
RRYLVLPSLISGRIYAIDTLKDPRAPSLHKVVEPADIVNKTGLAYPHTSHCLASGDVMVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPTFGYDF
WYQPRHNIMISSSWGAPAAFTKGFNLQHVADGLYGRHLNVYSWPNGELKQTLDLGDTGLLPLEIRFLHDPSKDSGFVGCALTSNMVRFFKTPDGSWSHEV
AISVKPLKVQNWILPEMPGLVTDFLISLDDRFLYFVNWLHGDVRQYSIEDPEKPVLKGQVWVGGLIQKGSSVVAEGEDGKTWQYDVPEIQGHRLRGGPQM
IQLSLDGKRLYVTNSLFSTWDRQFYPELMEKGSHMLQIDVDTEKGGLAINPNYFVDFAAEPDGPSLAHEMRYPGGDCTSDIWI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14030 SBP1 selenium-binding protein 1 (.1... Potri.017G060000
[exp]
0 1 SBP.2
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Potri.004G159800
[exp]
1.00 0.8526 GAL1.4
AT5G13980 Glycosyl hydrolase family 38 p... Potri.014G143600
[exp]
5.09 0.8167
AT5G66900 Disease resistance protein (CC... Potri.007G039300
[exp]
6.32 0.7830
AT1G72490 unknown protein Potri.003G068300
[exp]
7.48 0.7417
AT1G65810 P-loop containing nucleoside t... Potri.008G143000
[exp]
11.61 0.7681
AT4G03540 Uncharacterised protein family... Potri.011G052100
[exp]
12.64 0.7613
AT4G34160 CYCD3;1 CYCLIN D3;1 (.1) Potri.002G123000
[exp]
13.03 0.7552 Pt-CYCD1.3
AT3G17940 Galactose mutarotase-like supe... Potri.017G129300
[exp]
14.89 0.7681
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
17.54 0.7303
AT3G03990 alpha/beta-Hydrolases superfam... Potri.014G016500
[exp]
26.40 0.7189

Potri.017G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.