Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23790 1024 / 0 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) AT4G14070 988 / 0 AAE15 acyl-activating enzyme 15 (.1) AT5G27600 201 / 9e-55 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT2G47240 189 / 6e-51 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G05970 189 / 6e-51 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 177 / 1e-46 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 174 / 6e-46 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 159 / 1e-40 AMP-dependent synthetase and ligase family protein (.1) AT1G49430 156 / 9e-40 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G04350 154 / 6e-39 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321800 [exp] 1321 / 0 AT3G23790 1016 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.013G021300 [exp] 204 / 3e-56 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 178 / 5e-47 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 177 / 5e-47 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 176 / 1e-46 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.002G192400 [exp] 174 / 1e-45 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 164 / 2e-42 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.009G109900 [exp] 160 / 5e-41 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G084100 [exp] 149 / 4e-37 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008884 [exp] 1084 / 0 AT3G23790 977 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10023224 [exp] 1019 / 0 AT3G23790 905 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10029918 [exp] 209 / 1e-57 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 207 / 7e-57 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 182 / 3e-48 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 173 / 4e-45 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 169 / 4e-44 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023832 [exp] 167 / 2e-43 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 166 / 6e-43 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10032380 [exp] 164 / 7e-42 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.017G060100.1 pacid=42814205 polypeptide=Potri.017G060100.1.p locus=Potri.017G060100 ID=Potri.017G060100.1.v4.1 annot-version=v4.1 ATGACTACTGCCACAGTGCTTTCTGTGTCTTCCTTTCCAACGAATCCAATGTCAACGGTTTCTTCAACTTTTTGCTCTCATTTTGGTGGTACTGATTTCG GTAAAAGGCATGCTGCTTTTCAATTCTTGGTCCCTCATTATAATTTCAAGAACTCCAAGATTTTCCATAAAAGATTCAGTAATGGGCTCTCTTCACGTCG AGGATTTCGACTTTCTTGCGAAACCAAGACAGAGGAGATTAAGATAAGAAGGTGTTCACCTTACCTAGAAAGGACCCTAGTTTCCAGCAATGGTGCCTTG ACCTCTGATGATTGGAGAGCTGTTCCTGACATTTGGAGGTCTTCAGCTGAGAAATATGGTGATCGGATTGCAGTGGTGGATCCATATCATGATCCACCTA CAAGTTTGACATATAAACAGTTGGAGCAGGAAATTTTGGATTTTTCTGAAGGCTTGAGGGTTATTGGAGTTAAGCCAGATGAGAAACTTGCACTTTTTGC TGATAATTCATACCGGTGGCTTGTTACAGATCAAGGTATGATGGCCATGGGAGCAGTTGATGTGGTGAGGGGATCAAGATCATCTATTGAAGAGCTATTA CAAATATACATTCACTCTGAAAGTGTTGCACTTGCAGTGGACAATCCTGAATTGTTCAATCGAATTGTAGAAACATTTTGTTCCAAGGCAGCTCCCAGAT TTGTCATTTTACTTTGGGGAGAGAAGTCACACCTTGCCATCAACAGAATGGAGGGCATACCTATTTTCAGTTACAAGGAGATTATAGATTTGGGGCAAGA GAGCTGTAAAGCTTTCTCAGACTCCGATGATGCGAGGCAGCACTATAAATATGAAACAATAAGCTCTGACGATATTGCTACACTTGTTTATACTAGTGGA ACCACTGGAAATCCAAAAGGTGTCATGCTTACTCATAAGAATCTGCTGCACCAGATAAATAATTTGTGGGATGTTGTGCCTGCTCAACCTGCAGACAGAT TTCTGAGTATGCTTCCACCTTGGCATGCATATGAGCGAGCTGCTGAGTATTTCATATTTACACATGGAACTGAGCAAGTATACACTACTGTCAGGAATTT AAAGGTTGATCTGCAACAATATCAGCCACATTACTTGATCACTGTTCCTTTAGTATTTGAGACTCTTTACAGTGGGATACAAAAACAGCTTTCTACAAGC TCCGCTCTTCGTAAGATTCTTGCATTTATGTTCATAAAGATCAGCTTGACATACATGGAGATGAAAAGAATTTATGAGGGAACTTATCTTGTGAGGTCTA GGAAGGAACCACCGTATTTTGTTTCAATGCTGGACTGGTTATGGGCAAGAATCATTGCTGCAATATTGTTGCCAGTACATATGTTGGCTAAGAAGCTTGT TTACAGTAAAATTCACTCAGCAATTGGAATAAGCAAGGCTGGCGTAAGTGGAGGTGGTAGCTTACCTTCACATGTTGACAAGTTTTTTGAGGCAATTGGT GTTGTAGTGCAGAACGGATATGGTATGACGGAGTCATCTCCAGTTACTGCTGCTCGACGACCTAGCAACAATGTTCTTGGTTCAATTGGGCTTCCAATTC GGCATACAGAATTTAAGATTGTAGATGCTGAAACTGGCGAAGCTCTTCCACATGGCTCGAAAGGGATTGTAAAAGTTAGGGGGCCACAAGTGATGAAAGG CTACTACAAGAATCCATTGGCCACAAAGCAAGCCGTAGATGAGGATGGTTGGCTAAACAGTGGTGATATAGGTTGGATAGCTCCTTACCATTCAAGAGGG CGAAGCCGTCACTGTGGAGGGGTTATTGTTCTTGAAGGCCGTGCTAAGGATACTATAGTTCTTTTGACAGGTGAAAATGTTGAGCCCTTGGAGCTTGAAG AAGCTGCAATGAGGAGTAGTCTTATTCAACAGATTGTTGTTATTGGCCAGGATCAGCGTCGTCTTGGAGCTATAGTTGTTCCCAACAAAGATGAGGTACT AGAGGCTGCAAAAAAGTGGTCCATTGTAGATCCAGATGCCACTGAGCTGAGTAAGAAACAGATCACCAGCCTGCTAAATGAAGAATTGAGGAAGTGGACA TCAGGGTGTTCTTTTCAAATTGGACCAATCCTTGTTATCGATGAGCCTTTTACAATTGATAGTGGCTTGATGACCCCAACGATGAAAATCCGAAGAGACA AAGTTGTAGCACTATACAAAGAACAGATAGCCGATCTCTACAAGTAG
AA sequence Show only first row Show all	>Potri.017G060100.1 pacid=42814205 polypeptide=Potri.017G060100.1.p locus=Potri.017G060100 ID=Potri.017G060100.1.v4.1 annot-version=v4.1 MTTATVLSVSSFPTNPMSTVSSTFCSHFGGTDFGKRHAAFQFLVPHYNFKNSKIFHKRFSNGLSSRRGFRLSCETKTEEIKIRRCSPYLERTLVSSNGAL TSDDWRAVPDIWRSSAEKYGDRIAVVDPYHDPPTSLTYKQLEQEILDFSEGLRVIGVKPDEKLALFADNSYRWLVTDQGMMAMGAVDVVRGSRSSIEELL QIYIHSESVALAVDNPELFNRIVETFCSKAAPRFVILLWGEKSHLAINRMEGIPIFSYKEIIDLGQESCKAFSDSDDARQHYKYETISSDDIATLVYTSG TTGNPKGVMLTHKNLLHQINNLWDVVPAQPADRFLSMLPPWHAYERAAEYFIFTHGTEQVYTTVRNLKVDLQQYQPHYLITVPLVFETLYSGIQKQLSTS SALRKILAFMFIKISLTYMEMKRIYEGTYLVRSRKEPPYFVSMLDWLWARIIAAILLPVHMLAKKLVYSKIHSAIGISKAGVSGGGSLPSHVDKFFEAIG VVVQNGYGMTESSPVTAARRPSNNVLGSIGLPIRHTEFKIVDAETGEALPHGSKGIVKVRGPQVMKGYYKNPLATKQAVDEDGWLNSGDIGWIAPYHSRG RSRHCGGVIVLEGRAKDTIVLLTGENVEPLELEEAAMRSSLIQQIVVIGQDQRRLGAIVVPNKDEVLEAAKKWSIVDPDATELSKKQITSLLNEELRKWT SGCSFQIGPILVIDEPFTIDSGLMTPTMKIRRDKVVALYKEQIADLYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.017G060100 [exp]	0	1
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	10.09	0.8239
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G090700 [exp]	13.41	0.7498	Pt-HPT1.2
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	16.15	0.8393	ATML1.2
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Potri.001G044900 [exp]	17.88	0.8148	Pt-NRAMP1.3
AT4G31980			unknown protein		Potri.017G145100 [exp]	19.49	0.7740
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	23.74	0.7987
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009100 [exp]	28.46	0.8111
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	32.03	0.7744
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	35.49	0.7904	Pt-PHOT1.1
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	39.57	0.7643

Compare expression of checked genes

Potri.017G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.