Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23770 599 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 569 / 0 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 527 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 335 / 1e-110 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 334 / 1e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 333 / 3e-110 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 308 / 1e-99 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 304 / 3e-98 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 302 / 6e-97 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 290 / 6e-93 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321900 [exp] 799 / 0 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 561 / 0 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 538 / 0 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 340 / 8e-113 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 338 / 5e-112 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 319 / 3e-104 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 298 / 5e-96 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 295 / 1e-94 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 291 / 5e-93 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008881 [exp] 628 / 0 AT3G23770 579 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023226 [exp] 624 / 0 AT3G23770 572 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 518 / 0 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10025892 [exp] 452 / 4e-157 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 341 / 4e-113 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 340 / 1e-112 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004391 [exp] 334 / 3e-110 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 328 / 9e-108 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 323 / 5e-106 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 292 / 3e-93 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.017G060300.2 pacid=42813963 polypeptide=Potri.017G060300.2.p locus=Potri.017G060300 ID=Potri.017G060300.2.v4.1 annot-version=v4.1 ATGACAAGAAAAATGCGTGGCGATGCTCTCCTTTTCTTCTCTCTTCTTGTTCTCTCTGATGCAATGCCTTCAGGGAAGATTGGGGTGAACTATGGCCTGC TTGGGAACAACTTGCCATCTGCAGGTCAATCCATAGAATCTCTTAGAGCCATGAAAGCTGGCAGTGTAAAGCTCTATGATGCCAACCCTGAAATCCTGAG ACTCCTAGCAGGAACTGATATCCGGGTCTCCATTATGGTTCCCAATTATGAAATCATCAACATAGCCACCAACCAGACCTCCGCCAACAAATGGGTCGAA GACAATGTCCTCGCTTACCACCCTGAAACCATGATCCGTACCATTCTTGTTGGCAATGAAGTTCTCAGCTATTGTTCAGATGAAGGAAAACGGATTTGGA ATCATCTTGTGCCTGCAATGCGTAGAATCAAGATCTCTCTCAGAGCTCAGGATATCCGTAACATCAAAGTAGGCACTCCGCTAGCCATGGACGTGCTGCA AACAGCTTTTCCACCATCCACTGCGACTTTTCGGCCTGATATCTCAACTACCGTGATGGTGCCATTGCTAAAATTCTTAAACAGCACCAAGTCATTTTTC TTCATTGACGTCTACCCTTATTTCCCTTGGTCTGAAAATCCCATCAATATAAACCTCGATTATGCGTTGTTTCAATCAAATATCAAATACACTGACCCCG GTAGTGGCTTAGTCTACACCAACCTCCTAGACCAAATGCTTGACTCCCTTGTTTTTGCCATGACCAAACTTGGATTTCACAGTATCCGGCTTTCGATAGC TGAAACTGGCTGGCCTAATGCAGGCGATATCGGTGAAACTGGTGCTAGCATTTACAACGCAGCTACTTACAATCGGAATCTTGTTACGAAGATGACTGGT CAGCCCCTAATCGGCACCCCAGCTAGACCAGGTTTGTTCATACCAGCATTTATCTTTTCCTTGTACGATGAGAACCAAAAGACTGGCCCGGGAACAGAGC GGCACTGGGGCTTGTTGCATCCAAATGGGACGTCTATATATCAAATTGATTTGACAGGGAAGAGAGCATCATCAGACTATGAACCGCTACCTGCAACACA CAATGACATGCCCTATGAAGGCAAATCATGGTGCGTAGCAACACCGGACGTCAATCTGACAGAGTTGGAAAGAGCATTAACTTTTGCATGCAGTCAAGGA AACGGGACCTGTGAAGCCTTGACCCCAGGGAAGGAATGTTACGAGCCATTGTCAGTAATTTGGCATGCCAGTTTTGCATTTAGCTCGTATTGGGCTAAGT TCAGGAGCCAGGGTGCCAATTGCTACTTCAATGGACTTGCTGTGCAGACCACCAGTGATCCAAGTCGAGGATTATGCCAGTTCCCCAGTGTGACTATTTG A
AA sequence Show only first row Show all	>Potri.017G060300.2 pacid=42813963 polypeptide=Potri.017G060300.2.p locus=Potri.017G060300 ID=Potri.017G060300.2.v4.1 annot-version=v4.1 MTRKMRGDALLFFSLLVLSDAMPSGKIGVNYGLLGNNLPSAGQSIESLRAMKAGSVKLYDANPEILRLLAGTDIRVSIMVPNYEIINIATNQTSANKWVE DNVLAYHPETMIRTILVGNEVLSYCSDEGKRIWNHLVPAMRRIKISLRAQDIRNIKVGTPLAMDVLQTAFPPSTATFRPDISTTVMVPLLKFLNSTKSFF FIDVYPYFPWSENPININLDYALFQSNIKYTDPGSGLVYTNLLDQMLDSLVFAMTKLGFHSIRLSIAETGWPNAGDIGETGASIYNAATYNRNLVTKMTG QPLIGTPARPGLFIPAFIFSLYDENQKTGPGTERHWGLLHPNGTSIYQIDLTGKRASSDYEPLPATHNDMPYEGKSWCVATPDVNLTELERALTFACSQG NGTCEALTPGKECYEPLSVIWHASFAFSSYWAKFRSQGANCYFNGLAVQTTSDPSRGLCQFPSVTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.017G060300 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028100 [exp]	1.41	0.8823
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	3.16	0.8207
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.009G068000 [exp]	6.48	0.8068
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	6.48	0.8179
AT1G79360		2-Oct, ATOCT2	ORGANIC CATION TRANSPORTER 2, ...		Potri.010G174300 [exp]	9.59	0.8757
					Potri.010G171166 [exp]	21.72	0.6761
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.001G321900 [exp]	21.90	0.8249	A6.1
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	24.45	0.7551	Pt-HPT2.3
					Potri.009G097750 [exp]	26.22	0.7921
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.015G102100 [exp]	29.24	0.7787

Compare expression of checked genes

Potri.017G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.