Plant FIBer expression Database

Potri.017G060701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G322200
[exp]
159 / 2e-49 AT1G03080 69 / 8e-13 kinase interacting (KIP1-like) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035158
[exp]
56 / 3e-10 ND /
PFAM info
Representative CDS sequence
>Potri.017G060701.1 pacid=42813355 polypeptide=Potri.017G060701.1.p locus=Potri.017G060701 ID=Potri.017G060701.1.v4.1 annot-version=v4.1
ATGATGTCCACTGAAGAATGCAAGATGAAATTAAAAACAAAAACTGAAATTGGAGAAAATCAAATGGATAAGAAAGCCACAGATTTTTGCCAAGTAGAAG
ATAACAGAACGAATATGAACGATAATGGGATAGTGAAGGCCACAGCAAGAGCCTTCTCAGAGGGTGGAAGTCATGAGTGGGAGAATATATGGTATGAACT
CAAGTTTCAGATCACAAACCTTAGGGAGGAAAATCTGCGGCAGCAGGCTGAGCTAGCAAGGAGAAACATCGAAAAGAGACTGGTGATTGATAAGCTCTGG
CTAGAGCTGGAACATTTTGAAGGTTCAGAACAGGTCCCTCCAGAGCTGCACCAGCTGTTTAAAAGTTGGAGGGGGAGCGCAACTCATTTCAGATAA
AA sequence
>Potri.017G060701.1 pacid=42813355 polypeptide=Potri.017G060701.1.p locus=Potri.017G060701 ID=Potri.017G060701.1.v4.1 annot-version=v4.1
MMSTEECKMKLKTKTEIGENQMDKKATDFCQVEDNRTNMNDNGIVKATARAFSEGGSHEWENIWYELKFQITNLREENLRQQAELARRNIEKRLVIDKLW
LELEHFEGSEQVPPELHQLFKSWRGSATHFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G060701
[exp]
0 1
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.006G007100
[exp]
3.16 0.8010
AT5G01310 bHLH APTX, bHLH140 APRATAXIN-like (.1) Potri.016G120200
[exp]
11.66 0.8306
AT3G14470 NB-ARC domain-containing disea... Potri.017G015300
[exp]
23.06 0.8039
Potri.006G071401
[exp]
24.24 0.7255
AT5G09380 RNA polymerase III RPC4 (.1) Potri.006G143500
[exp]
36.02 0.7918
AT1G64790 ILA ILITYHIA (.1.2) Potri.019G024200
[exp]
41.66 0.7951
AT5G42480 ARC6 ACCUMULATION AND REPLICATION O... Potri.002G027501
[exp]
42.21 0.7795
AT1G27170 transmembrane receptors;ATP bi... Potri.019G070522
[exp]
42.48 0.7461
AT1G10417 unknown protein Potri.008G190600
[exp]
45.89 0.7950
AT4G18840 Pentatricopeptide repeat (PPR-... Potri.001G108500
[exp]
48.71 0.7842

Potri.017G060701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.