Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 541 / 0 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 475 / 1e-168 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 294 / 3e-98 PHT3;3 phosphate transporter 3;3 (.1) AT5G48970 62 / 1e-10 Mitochondrial substrate carrier family protein (.1) AT4G01100 60 / 8e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G11440 60 / 2e-09 Mitochondrial substrate carrier family protein (.1) AT4G32400 59 / 3e-09 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G09470 56 / 1e-08 DIC3 dicarboxylate carrier 3 (.1) AT3G21390 56 / 1e-08 Mitochondrial substrate carrier family protein (.1) AT1G79900 56 / 2e-08 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322300 [exp] 580 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 526 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 510 / 0 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 306 / 1e-102 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 281 / 4e-93 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.006G099800 [exp] 70 / 5e-13 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 70 / 7e-13 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.007G019000 [exp] 68 / 1e-12 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.001G094100 [exp] 64 / 3e-11 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041519 [exp] 542 / 0 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 540 / 0 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 535 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 530 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 286 / 2e-94 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 284 / 1e-93 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 268 / 4e-85 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10033948 [exp] 67 / 6e-12 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 67 / 7e-12 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 66 / 1e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.017G060800.1 pacid=42813727 polypeptide=Potri.017G060800.1.p locus=Potri.017G060800 ID=Potri.017G060800.1.v4.1 annot-version=v4.1 ATGGATTCTCTCAGACAACAGTCACTAATCCCTAGATTCCTCTACTCCTCTTCTTCCTCCGCTAAAACTTTCTCCCTCTCTAGCCTCCACTCCGAACAAC CATCACTTTCTCCGCCGCCGTCATCAACGGTCACTATGGGAAGCAAGAGCAGTGGCGGATTTGTGATCCCGACACCGAGTGAGCCTGGGAAGAAGATCGA GATGTACTCGCCTGCTTTCTATGCTGCTTGCACTGCTGGTGGTATTCTTAGCTGTGGACTTACTCATATGACTGTTACTCCTCTTGACCTTGTCAAGTGC AATATGCAGATAGACCCTGCCAAGTACAAGAGCACCTCATCTGGTTTTGGAGTTCTGCTCAGGGAGCAAGGAGTGAGAGGCTTCTTCAGGGGTTGGGTGC CCACCCTTCTTGGTTACAGTGCTCAGGGGGCCTGCAAATTTGGTTTCTATGAGTTTTTCAAGAAGTACTACTCTGATCTTGCCGGGCCTGAGTTTGCAGC CAAGTACAAGACCTTGATTTACCTTGCTGGTTCTGCTTCTGCTGAGGTGATTGCTGACATTGCTCTTTGCCCCTTTGAGGCAGTGAAGGTTCGTGTTCAA ACTCAGCCTGGGTTTGCTAGAGGTTTATCTGATGGACTTCCTAAGTTTGTCAAAGCTGAAGGCGCACTTGGGCTGTACAAAGGTCTTGTTCCCCTCTGGG GTCGTCAGATTCCATATACAATGATGAAGTTTGCATCGTTTGAGACCATTGTAGAGATGATCTACAAGTATTCCATCCCCAAACCAAAGGACCAGTGCAG CAAATCTCTGCAACTTGGTGTTAGTTTTGCTGGTGGTTATGTTGCTGGTGTGCTCTGTGCTATTGTGTCTCATCCTGCCGATAATCTCGTCTCATTCCTG AACAACTCTAAAGGGGCAACTGTTGGTGATGCTGTGAAGAAGCTAGGTTTGTGGGGTCTGTTCACTCGTGGGTTGCCTCTCCGAATTGTCATGATTGGAA CTCTTACTGGAGCTCAGTGGGGTATCTATGATGCATTCAAAGTCTTTGTGGGATTGCCTACTACTGGTGGCCCTGCCCCCGCAGCCGCTCCTGCTGTGGC AGCTGCTGAACTTACGAAGGTGTAA
AA sequence Show only first row Show all	>Potri.017G060800.1 pacid=42813727 polypeptide=Potri.017G060800.1.p locus=Potri.017G060800 ID=Potri.017G060800.1.v4.1 annot-version=v4.1 MDSLRQQSLIPRFLYSSSSSAKTFSLSSLHSEQPSLSPPPSSTVTMGSKSSGGFVIPTPSEPGKKIEMYSPAFYAACTAGGILSCGLTHMTVTPLDLVKC NMQIDPAKYKSTSSGFGVLLREQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPEFAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQ TQPGFARGLSDGLPKFVKAEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKYSIPKPKDQCSKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFL NNSKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAVAAAELTKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.017G060800 [exp]	0	1
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	7.93	0.7203
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	9.21	0.7309	RPL18.6
AT1G10840		TIF3H1	translation initiation factor ...		Potri.002G233500 [exp]	10.67	0.7547	TIF3.6
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	16.67	0.8061
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.014G058500 [exp]	21.44	0.7500	BSTCP.1
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.006G147500 [exp]	22.04	0.6532	Pt-NMT1.6
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	22.84	0.6744
AT5G20180			Ribosomal protein L36 (.1.2)		Potri.006G069000 [exp]	26.24	0.6551
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	29.29	0.7014
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.010G215300 [exp]	30.00	0.6987

Compare expression of checked genes

Potri.017G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.