Plant FIBer expression Database

Potri.017G061100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12840 645 / 0 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G322500
[exp]
647 / 0 AT1G12840 625 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031990
[exp]
624 / 0 AT1G12840 665 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Lus10035159
[exp]
619 / 0 AT1G12840 663 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03223 V-ATPase_C V-ATPase subunit C
Representative CDS sequence
>Potri.017G061100.1 pacid=42814632 polypeptide=Potri.017G061100.1.p locus=Potri.017G061100 ID=Potri.017G061100.1.v4.1 annot-version=v4.1
ATGGCGAGTCGATACTGGGCGGTTTCTCTTCCTGTTCAAAACTCAGCTTCTTCCGTATGGAACAATTTGCAAGAACAAATCTCCAAGCACTCCTTTGATA
CACCTCTCTACAGGTTTAATATCCCTAATCTTCGTGTTGGAACCCTCGATTCACTCCTCTCCCTTAGCGATGATCTCGTCAGGTCAAATAGCTTTATAGA
AGGAGTGGCACAGAAGATCAGAAGACAGATCGAGGAATTGCAGAGGGTATCGGGTGTGGAGAGCAATGCTTTGACAGTTGATGGTGTGCCAGTTGACTCA
TATCTAACCAGGTTTGTTTGGGATGAAGCTAAATATCCAACAATGTCACCTCTAAAGGAGATTGTGGATAGTATCCATACTCAAGTGGCAAAGATTGAAG
ATGACCTCAAGGTTCGTGTTGCTGAGTATAATAATGTACGCAGTCAGCTCAATGCTATCAATCGGAAGCAGAGTGGAAGCTTAGCTGTTCGTGATCTTTC
CAATTTGGTGAAACCAGAGGACATTATTGTCTCTGAAAACCTCGTAACCCTCCTTGCAATTGTTCCCAAGTATTCACAAAAGGACTGGTTGGCAAGCTAT
GAAACGTTGACTAGCTATGTGGTTCCTAGGTCCTCAAAAAAGTTATATGAAGACAATGAATATGCTCTTTACACAGTAACACTATTTCATCGTGTGGCAG
ACAATTTTAGAACAAGTTCACGTGACAAAGGTTTCCAAATTCGCGATATTGAACATAGTTCAGAAGCACAAGAGAATCGGAAGCAAGAGTTAGAGAGAAT
AGTGCAAGATCAAGAAAGTTTGAGAAGTTCTCTTTTGCAGTGGTGCTATACTAGTTATGGGGAGGTTTTCAGCTCTTGGATGCATTTTTGTGCTGTTCGT
GTCTTTGCAGAGAGCATTCTAAGATATGGATTGCCACCATCATTCCTGGCTTGTGTTTTATCTCCCTCCTTGAAAGGCGAGAAGAAAGTGCGTTCAATTC
TCGATGGATTGGGTGACAGTTCCAACAGCACATACTGGAAATCTGAAGATGAAGTGGTAGGAGGGATGATGGGTTTGGGAGGCGATGCTGATACTCATCC
TTATGTGTCCTTCACAATCAATCTTGTCTGA
AA sequence
>Potri.017G061100.1 pacid=42814632 polypeptide=Potri.017G061100.1.p locus=Potri.017G061100 ID=Potri.017G061100.1.v4.1 annot-version=v4.1
MASRYWAVSLPVQNSASSVWNNLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVRSNSFIEGVAQKIRRQIEELQRVSGVESNALTVDGVPVDS
YLTRFVWDEAKYPTMSPLKEIVDSIHTQVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIIVSENLVTLLAIVPKYSQKDWLASY
ETLTSYVVPRSSKKLYEDNEYALYTVTLFHRVADNFRTSSRDKGFQIRDIEHSSEAQENRKQELERIVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR
VFAESILRYGLPPSFLACVLSPSLKGEKKVRSILDGLGDSSNSTYWKSEDEVVGGMMGLGGDADTHPYVSFTINLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Potri.017G061100
[exp]
0 1
AT3G42050 vacuolar ATP synthase subunit ... Potri.013G078700
[exp]
3.31 0.9260
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Potri.004G074400
[exp]
4.89 0.9073
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.002G168100
[exp]
5.47 0.9059
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.002G191400
[exp]
6.16 0.9233 ARF1.2
AT4G18060 SH3 domain-containing protein ... Potri.001G354700
[exp]
9.74 0.8917
AT4G02620 vacuolar ATPase subunit F fami... Potri.005G217600
[exp]
15.09 0.8967 VATF.1
AT1G09430 ACLA-3 ATP-citrate lyase A-3 (.1) Potri.013G004400
[exp]
16.34 0.9120 ACLA.3
AT1G79550 PGK phosphoglycerate kinase (.1.2) Potri.008G084400
[exp]
18.97 0.8920
AT5G26667 PYR6 P-loop containing nucleoside t... Potri.014G043300
[exp]
21.49 0.9047
AT3G49720 unknown protein Potri.009G082400
[exp]
25.27 0.9003

Potri.017G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.