Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14030 204 / 9e-67 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323400 [exp] 251 / 2e-85 AT5G14030 215 / 2e-71 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035166 [exp] 226 / 3e-75 AT5G14030 264 / 7e-91 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10031996 [exp] 225 / 5e-75 AT5G14030 263 / 1e-90 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012565 [exp] 217 / 9e-72 AT5G14030 254 / 5e-87 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10041525 [exp] 212 / 6e-68 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF05753 [poplar] [flax] TRAP_beta Translocon-associated protein beta (TRAPB)
Representative CDS sequence Show only first row Show all	>Potri.017G061900.1 pacid=42813339 polypeptide=Potri.017G061900.1.p locus=Potri.017G061900 ID=Potri.017G061900.1.v4.1 annot-version=v4.1 ATGTCGACTTCCACATTTTTCACCAAAAAACAACCAGATCCTCCTCCTGCACAACCACCACCACCACCACCACCACCACGACGAAATCCAATGGCAAACC CGATAACAACAAAAATTCTATTCTCTATATTACTATCTCTCCTATTGGTATCCTCATCACTCGCTAGCTCCGATGTTCCCTTCATCGTCGCTCACAAGAA AGCCACTCCCAGAGGCCTCAAATCTGGAGCTGAGCGCGTCTCCGTCTCCATCGATATTTACAATCAAGGATCCTCGACAGCATATGATATAACTCTCACT GATGATCACTGGCCTAAAGATATATTTGATGTCGTCAGTGGCAATACTTCACAGTCATGGGACAGGCTTGATGCTGGTGGTCTCCTGTCACACGCTTTTG AATTGGAGGGCAAAGTGAAAGGAATGTTTCACGGTTCTCCAGCAGTCATTACATTCCGTATCCCCACAAAGGCTGCCCTACAGGAGGCATATTCGACTCC CATCCTGCCTCTTGATGTCCTTGCAGAAAAACCTCCAGTGCAGAAGTTGGAGTTGGCAAAGAAGCTTTTGGCTAAGTATGGGTCTCTAATTTCTGTGATC TCCATTGTGGTTCTGTTCATCTACCTGCTCGTTACCCCATCCAAATCCGGTGCTGCAAAAGCAAACAAGAAGAGACGTTAA
AA sequence Show only first row Show all	>Potri.017G061900.1 pacid=42813339 polypeptide=Potri.017G061900.1.p locus=Potri.017G061900 ID=Potri.017G061900.1.v4.1 annot-version=v4.1 MSTSTFFTKKQPDPPPAQPPPPPPPPRRNPMANPITTKILFSILLSLLLVSSSLASSDVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDITLT DDHWPKDIFDVVSGNTSQSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTKAALQEAYSTPILPLDVLAEKPPVQKLELAKKLLAKYGSLISVI SIVVLFIYLLVTPSKSGAAKANKKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	0	1
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	1.41	0.9433
AT3G52730			ubiquinol-cytochrome C reducta...		Potri.004G188700 [exp]	2.23	0.9340
AT3G07480			2Fe-2S ferredoxin-like superfa...		Potri.014G177100 [exp]	2.44	0.9366
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.017G056000 [exp]	4.24	0.9276
AT5G14030			translocon-associated protein ...		Potri.001G323400 [exp]	4.47	0.9403
AT2G39960			Microsomal signal peptidase 25...		Potri.010G192700 [exp]	5.29	0.9316
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.002G082100 [exp]	5.29	0.9044	Pt-PDI.4
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G232000 [exp]	5.65	0.9287
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	6.16	0.9122
AT3G49100			Signal recognition particle, S...		Potri.002G043600 [exp]	7.34	0.8906	SRP9.2

Compare expression of checked genes

Potri.017G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.