Plant FIBer expression Database

Potri.017G062000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14020 524 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
AT1G73390 335 / 3e-112 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
AT1G17940 318 / 8e-106 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G323600
[exp]
741 / 0 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Potri.004G067400
[exp]
331 / 1e-110 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Potri.017G154200
[exp]
318 / 6e-106 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031997
[exp]
643 / 0 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10041527
[exp]
640 / 0 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10035167
[exp]
635 / 0 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10012563
[exp]
633 / 0 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10031881
[exp]
352 / 8e-119 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10042289
[exp]
345 / 7e-116 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10031313
[exp]
341 / 3e-114 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10026368
[exp]
298 / 3e-97 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03097 BRO1 BRO1-like domain
Representative CDS sequence
>Potri.017G062000.1 pacid=42813583 polypeptide=Potri.017G062000.1.p locus=Potri.017G062000 ID=Potri.017G062000.1.v4.1 annot-version=v4.1
ATGGGGTGCGGTGCTTCTATGTATCCACTTGCGGGGAGAGAGAAAAAAAGTGTACCAGAAGTGGTAGTGTATGTTCCTTCAATGAGAATACCTGCACACT
CTGATCTTCAAAGGCCACTAAGAGGGTTAATTCCTCAAGATCTTGTTGATAGGTTGGCCTGCCTTCGCAATCAGATTGTGTTAGTGGCTGAGGATACAGG
TGGATCTGCCGTGACTGAACTAAGGAGGGCACTGGAAGAGTACTTGTCTCTTCTTATTGGGCTCACCAAGAAAGAACATGGACTCGAGGGCTTGGTCGAG
TTCAAGTGGAAAAATCTGGAAACTGGCCGGCAGGAAAACTCTGTGGCAAACTCCTGGTTTGAATTATTATCTGTCATTCACATGATAGCAATGCTTACTT
TGTCAGAGGCTAACACATTGATGATCCCTAAGGATCGCTCTGGTTCTGGCATTAGGGTTGTATCTTCAGATTGTAAGAGGGATGCTGTTGATTTACTGCT
TAAGGCATCGGGATGCTTGGTATTCTGTGTCCGTGAAATCTTGGCTCATTTACCACCAGATATCAAGAAAACCTTTTCAAAAGATTTCCAAGATGGTGTC
CTGGAGGCTATATCCATTCAAGCGCTAGGCCAGGGAACTGAAATTCAGCTCGGTTTCGCTGTTGAAAGTCAAAAGGCTTCTTTATCTGTGAAGAGGAGGT
TGGCATGTGAACAGCTGATCTACTTTAGTCAGGCTTATCACTTCTTGTCAGGGCTTGACATGAGTAATGGGCATGGAAAGAAGCATCTCTGTTTCATTAA
GTGGAAGTTCCTTGAAGCAAAGGCTGCAGCTTACTACTACCATGGTCTGATCCTTGACAAGGGCACTGAACCAGCCTGTCATGTTAGTGCTGTATGCTGT
TTTCTAGCTGCAGGTGGGCTTTTGTCAGAGAGCAAGAAGGCCTGCTTAACCTTTTGCCTCACAGCTCCTGTTACCAGATCTCCTCCGCTTTGGGGTGCAA
TGAAGCACTTGCATCAGAAAATTCCTGAAGTTGCATCAAGGAAGTCTCAGATGTATGGCTACCTCTTGGAAGAAGAGAAGGCTCTACAAGCACTGCCTGA
CCTACCAGATTTCCAGTTGTCATTGGCACCTGATGACTATGTATTGCCGGAAATAGATCCAGCATGGGATCGCGATAAGTGGGGCATACATAGTCAGCCC
TTAAAGGAGCACCTCAAAGATTCTGAAGATGAGACTGGAACTTAA
AA sequence
>Potri.017G062000.1 pacid=42813583 polypeptide=Potri.017G062000.1.p locus=Potri.017G062000 ID=Potri.017G062000.1.v4.1 annot-version=v4.1
MGCGASMYPLAGREKKSVPEVVVYVPSMRIPAHSDLQRPLRGLIPQDLVDRLACLRNQIVLVAEDTGGSAVTELRRALEEYLSLLIGLTKKEHGLEGLVE
FKWKNLETGRQENSVANSWFELLSVIHMIAMLTLSEANTLMIPKDRSGSGIRVVSSDCKRDAVDLLLKASGCLVFCVREILAHLPPDIKKTFSKDFQDGV
LEAISIQALGQGTEIQLGFAVESQKASLSVKRRLACEQLIYFSQAYHFLSGLDMSNGHGKKHLCFIKWKFLEAKAAAYYYHGLILDKGTEPACHVSAVCC
FLAAGGLLSESKKACLTFCLTAPVTRSPPLWGAMKHLHQKIPEVASRKSQMYGYLLEEEKALQALPDLPDFQLSLAPDDYVLPEIDPAWDRDKWGIHSQP
LKEHLKDSEDETGT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14020 Endosomal targeting BRO1-like ... Potri.017G062000
[exp]
0 1
AT1G24440 RING/U-box superfamily protein... Potri.012G093300
[exp]
1.00 0.9515
AT1G28130 GH3.17 Auxin-responsive GH3 family pr... Potri.003G161300
[exp]
1.73 0.9376 8
AT4G24140 BDG3 alpha/beta-Hydrolases superfam... Potri.003G147400
[exp]
2.82 0.9374
AT2G23540 GDSL-like Lipase/Acylhydrolase... Potri.007G036300
[exp]
5.47 0.9411
AT5G58860 CYP86A1 "cytochrome P450, family 86, s... Potri.001G249700
[exp]
12.24 0.9236 CYP86.5
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.011G145000
[exp]
12.84 0.9301 Pt-HMGR3.2
AT1G27660 bHLH bHLH110 basic helix-loop-helix (bHLH) ... Potri.007G020200
[exp]
13.85 0.9270
AT1G34110 Leucine-rich receptor-like pro... Potri.002G063300
[exp]
14.83 0.9099
AT5G54510 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-respon... Potri.011G129700
[exp]
15.87 0.8855 GH3-5,DFL1.2
AT2G46850 Protein kinase superfamily pro... Potri.002G181100
[exp]
17.29 0.9081

Potri.017G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.