Plant FIBer expression Database

Potri.017G062200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26840 644 / 0 Esterase/lipase/thioesterase family protein (.1)
AT5G41130 641 / 0 Esterase/lipase/thioesterase family protein (.1.2)
AT5G41120 631 / 0 Esterase/lipase/thioesterase family protein (.1)
AT3G02030 616 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1)
AT1G54570 600 / 0 Esterase/lipase/thioesterase family protein (.1)
AT3G26820 546 / 0 Esterase/lipase/thioesterase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G324000
[exp]
1144 / 0 AT5G41130 688 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Potri.001G323800
[exp]
926 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Potri.001G324200
[exp]
920 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.001G324400
[exp]
885 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Potri.013G033300
[exp]
622 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.005G046600
[exp]
620 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.005G046700
[exp]
616 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.013G033600
[exp]
604 / 0 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.013G033000
[exp]
603 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041529
[exp]
729 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Lus10012560
[exp]
705 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Lus10018998
[exp]
606 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Lus10033848
[exp]
578 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF03982 DAGAT Diacylglycerol acyltransferase
CL0028 AB_hydrolase PF12146 Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence
>Potri.017G062200.2 pacid=42812841 polypeptide=Potri.017G062200.2.p locus=Potri.017G062200 ID=Potri.017G062200.2.v4.1 annot-version=v4.1
ATGTCGGCTGTCACCGGAGGTTGCTTTTTTATGGCAGTTCATTGTCGTGTAATGCCCTCTTCGTCATCAACTAGCAAACCAAAACTGAAGCCCATATCAA
GAACGACAACGACCAATTTAAATGGGAATAGGGGATTTAAAAAGAAGCGGGAAGAAGTACAAACAGAGGAGATAAGAGAGAAGCAAAATCCGTATGTATT
AGAGTTGGAGAAAAAAGAAATGGAGTTTACGAGTAGTATGAAAAGCTTCCATGATTACTTTGAGCAGTGCAAGAATTTCATTAAACAGGACAGCGGTCCA
CCTCGGTGGTTCTCTCCGTTAGAGTGCGGTTCTCGCCTGGACAATTCTCCACTCCTCCTATTTTTGCCTGGGATTGATGGTGTTGGGCTAGGACTCTGTA
AGCATCACCATACTCTTGGAAAGATTTTTGACATATGGTGCTTGCATGTTCCGGTTAAGGACAGAACACCCTTTTTAGGCCTTGTGAAGTTTGTTGAGAG
AACAGTAAGAGCAGAGAATTACCATTCGCCGAAACGACCTATATATCTTGTTGGAGAATCTCTTGGAGCATGCCTTGCACTAGCTGTTGCAGCTCGTAAC
CCTGACATTAATCTTTCACTCCTTTTGTCTAATCCAGCAACATCTTTTGAAAAGTCACCACTGCAACCACTTGTCTCTTTCTTGGAAATCATACCCATCG
AACACCAGCTTTGGCTTTCTTATATGCTGAGCTTAATGACAGGTGATTCTTTGAAGATTGTAATGGACAATGCAGTAAAGGGAATTCCAGTACAACAAAT
AATTGGAGGATTATCAAAAGACGTTATTGCTATGTCATCTCACCTCAATGATTTAGCTGCCCTTTTACCTAGAGAAACACTTCTCTGGAAGCAACAGATG
CTTAAACCAGCTTCAGAATTCGCCAATTCTCGCCTCCATGCTGTAAAAGCTCAAACAGTTGTACTTTCCAGCGGAAAGGATCAGCTGCTACCAAGTGAAG
AGGAAGGTCAAAGACTTTTTCGTGCGCTCCCAAAATGTGAGAATATCAAGTTTAATGACAGTGGGCATTTCCTCCTCCTGGAAAATGGCATTGATTTGGC
AACAATAATCAAAGGTACTGTTGCTTTCTATCGCCTCGGAATACACCACGACTATGTTTCAGATTATGTACCACCGACCCCTTCCGAACTCAAAAAGTTA
TACGAATTGAACAGGTTGTTTCTGATAGCTACAAGTGCTGTCATGCTCTCAACTCTGGAAGGTGGGAAGGTTGTGAAGGGCCTTGCAGGAATTCCTTCAG
ACGGACCAGTCCTGTTCGTTGGCTATCATATGTTAATGGGATATGAATTGGCCCCGATGGTATCCCAATTGTTGTTGGAAAGAAATATTCTTCTGAGAGG
GCTGGCGCATCCACTTCTCTTCATGAGGAAGAAGAAAGAAGGGACGTTACCTCCATTATCAGATTTTGATCTAATAAGGGTAATGGGTGCAGTACCAGTT
TCAGGAACCAACTTATTCAAACTTCTATCTTCAAAGGCTCATGTGCTACTGTACCCAGGAGGTGCGCGCGAGGCTGCTCATCGGAAGGGTGAACAGTACA
AGTTGTTCTGGCCAGAACATCCCGAGTTTGTGAGGACAGCAGCTAGATTTGGAGCCAAAATTGTGCCATTTGGAGTTGTTGGAGAAGATGATTTTGGTGA
AGTGGTTTTTGATTTGGACGATCAAATGAAGATTCCTTTCCTAAGGGATGAAATTAGAAGATCAACAGAAGAAGAGGGTATCAGAGTGAGGGCTCAAATA
AATGGTGAGTTGGGAAACGAGAATATGCACTATCCATGGATTCTACCAAAATTTCCTGGCAGGTTCTATTACTATTTTGGCAAACCGATTGAAACAGAAG
GCAGGGAGCTGGAACTGAGGGACAAGGACAAAGCTCAGGAATTGTACTTGGAAATCAAATCTGAGGTGGAGAAATGCCTCGCTTTTTTGAAGGAGAAGAG
AGAGAGTGATCCTTACAGGAACATAGTGACCCGATTGACTTACCAGGCCATGCACGGTTTTAATTCTGAAGTTCCAACATTTGAAATATGA
AA sequence
>Potri.017G062200.2 pacid=42812841 polypeptide=Potri.017G062200.2.p locus=Potri.017G062200 ID=Potri.017G062200.2.v4.1 annot-version=v4.1
MSAVTGGCFFMAVHCRVMPSSSSTSKPKLKPISRTTTTNLNGNRGFKKKREEVQTEEIREKQNPYVLELEKKEMEFTSSMKSFHDYFEQCKNFIKQDSGP
PRWFSPLECGSRLDNSPLLLFLPGIDGVGLGLCKHHHTLGKIFDIWCLHVPVKDRTPFLGLVKFVERTVRAENYHSPKRPIYLVGESLGACLALAVAARN
PDINLSLLLSNPATSFEKSPLQPLVSFLEIIPIEHQLWLSYMLSLMTGDSLKIVMDNAVKGIPVQQIIGGLSKDVIAMSSHLNDLAALLPRETLLWKQQM
LKPASEFANSRLHAVKAQTVVLSSGKDQLLPSEEEGQRLFRALPKCENIKFNDSGHFLLLENGIDLATIIKGTVAFYRLGIHHDYVSDYVPPTPSELKKL
YELNRLFLIATSAVMLSTLEGGKVVKGLAGIPSDGPVLFVGYHMLMGYELAPMVSQLLLERNILLRGLAHPLLFMRKKKEGTLPPLSDFDLIRVMGAVPV
SGTNLFKLLSSKAHVLLYPGGAREAAHRKGEQYKLFWPEHPEFVRTAARFGAKIVPFGVVGEDDFGEVVFDLDDQMKIPFLRDEIRRSTEEEGIRVRAQI
NGELGNENMHYPWILPKFPGRFYYYFGKPIETEGRELELRDKDKAQELYLEIKSEVEKCLAFLKEKRESDPYRNIVTRLTYQAMHGFNSEVPTFEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26840 Esterase/lipase/thioesterase f... Potri.017G062200
[exp]
0 1
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.010G079000
[exp]
3.00 0.7900 CIPK4.2
AT4G34880 Amidase family protein (.1) Potri.009G130700
[exp]
4.47 0.7812
AT3G28345 MDR13, ABCB15 multi-drug resistance 13, ATP-... Potri.018G141400
[exp]
11.31 0.7303
Potri.005G135700
[exp]
11.48 0.7735
AT3G44260 AtCAF1a CCR4- associated factor 1a, Po... Potri.016G073000
[exp]
11.48 0.7045
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
14.73 0.7704
AT1G50460 ATHKL1, HKL1 hexokinase-like 1 (.1) Potri.001G254800
[exp]
15.74 0.8067
AT5G53540 P-loop containing nucleoside t... Potri.012G015670
[exp]
19.89 0.7641
AT2G45620 Nucleotidyltransferase family ... Potri.002G151000
[exp]
23.36 0.7507
AT4G39955 alpha/beta-Hydrolases superfam... Potri.007G094700
[exp]
23.81 0.7069

Potri.017G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.