Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18930 201 / 2e-66 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT4G18940 164 / 1e-51 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324500 [exp] 304 / 7e-107 AT4G18930 178 / 2e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.011G075600 [exp] 245 / 1e-83 AT4G18930 234 / 3e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002767 [exp] 204 / 2e-67 AT4G18930 172 / 4e-55 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10029278 [exp] 201 / 4e-66 AT4G18930 178 / 3e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10002766 [exp] 172 / 2e-55 AT4G18930 146 / 4e-45 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [poplar] [flax] 2H PF13563 [poplar] [flax] 2_5_RNA_ligase2 2'-5' RNA ligase superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G062400.1 pacid=42814458 polypeptide=Potri.017G062400.1.p locus=Potri.017G062400 ID=Potri.017G062400.1.v4.1 annot-version=v4.1 ATGGAGATCACCAATGAAACAGGCGTTGTTGCTGAAAAGAATGATTATTCAGTGTGGGCAATTCCACCTGAAGTTGTGGGAGAAAAGCTGAAAAAGTTGA TGGGGGTTCTTAGATCAGAGTTTGGTGGGCCAGAGATCCCACCACATATAACTGTTGTGGGTGCTACGAGCTTAACAGAGGAGGATGCTTTGAAGAAGTT TAGGTCAGCCTGTGAAGGGCTCAAGGCTTATCATGCTAAGGCTGATCTTGTAGTTTCTGGGGCTTTTCCCTCCCAATGCCTTTATTTGCTCTTCCATTCA ACGCCTGAGGTAATGGATGCAAGTGAACACTGCTGTAGGTATTTTGGGTACAAGAGGTCTAATCGGTATATGCCCCATCTTAGCCTCCTTTACGGGACTC TTACAGAAGATGAGAAGAATAAAGCTCGAGAAAAAGCTTATGTTCTTGATGAGAGCATCGATGGCCTGAACTTCCAGATAAGTCGCCTGGCACTGTGGAA AACAGACCGTAAAGACAAAGGAACTTTGGAATCATGGAGGCAGATTGCTGAATGCAGCCTTAGCCCCAACTAG
AA sequence Show only first row Show all	>Potri.017G062400.1 pacid=42814458 polypeptide=Potri.017G062400.1.p locus=Potri.017G062400 ID=Potri.017G062400.1.v4.1 annot-version=v4.1 MEITNETGVVAEKNDYSVWAIPPEVVGEKLKKLMGVLRSEFGGPEIPPHITVVGATSLTEEDALKKFRSACEGLKAYHAKADLVVSGAFPSQCLYLLFHS TPEVMDASEHCCRYFGYKRSNRYMPHLSLLYGTLTEDEKNKAREKAYVLDESIDGLNFQISRLALWKTDRKDKGTLESWRQIAECSLSPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.017G062400 [exp]	0	1
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	5.09	0.8772
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.001G050400 [exp]	16.85	0.8686
					Potri.015G069150 [exp]	16.97	0.8628
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	24.43	0.7750	SAD
AT1G27330			Ribosome associated membrane p...		Potri.006G017100 [exp]	28.80	0.8571
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.013G046100 [exp]	31.93	0.8310	Pt-PPCK2.1
AT4G35840			RING/U-box superfamily protein...		Potri.005G108200 [exp]	32.49	0.8477	ZF1.1
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.012G015100 [exp]	32.86	0.8242
AT2G16400	HD	BLH7	BEL1-like homeodomain 7 (.1)		Potri.002G031000 [exp]	33.67	0.8540
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.015G126301 [exp]	36.18	0.8388

Compare expression of checked genes

Potri.017G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.