Plant FIBer expression Database

SK1 (Potri.017G062800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SK1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26900 291 / 9e-99 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
AT2G21940 134 / 2e-37 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
AT4G39540 127 / 8e-35 ATSK2 shikimate kinase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G084600
[exp]
132 / 8e-37 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5)
Potri.007G081000
[exp]
132 / 1e-36 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5)
Potri.002G061100
[exp]
118 / 9e-32 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5)
Potri.003G096600
[exp]
41 / 0.0008 AT2G35500 447 / 5e-157 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035171
[exp]
217 / 1e-69 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Lus10032000
[exp]
152 / 3e-44 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Lus10035843
[exp]
134 / 2e-37 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5)
Lus10036626
[exp]
129 / 7e-34 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Lus10030990
[exp]
46 / 2e-05 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01202 SKI Shikimate kinase
Representative CDS sequence
>Potri.017G062800.2 pacid=42813389 polypeptide=Potri.017G062800.2.p locus=Potri.017G062800 ID=Potri.017G062800.2.v4.1 annot-version=v4.1
ATGGAGATAACGAAAGCAACAGCAACATCAACATTAGCAGCAGCAATTCACAATCTTTCCTTAAGCTCCTTGTCTTCAACAATTAGACCTCGACCTCGAC
CTTATTCACATTCTGGTTTTTCTAAATTCCCTCTTGTGTCTCGGCCAACGTCTCTCACCGCTACTTGCTCTCTTCCCAATGAAACAACTACTTCCACAAC
AAAGGTTGCTGGTGCTGACACTTCTCTTCAAGTGAAGAAGAGAGCAGCTGATTTGTCCCCTGAATTGAAGGGAACTTCTATTTTCCTTTTAGGAATGAGA
GGTCCTCTAAAAACCAATTTGGGTAAGCTTTTGGCGGATGCATTGAGATATTATTATTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCCGGTGGTGAAT
TTGCTGCCAGATCTTTGAAGGAGAGAGATGAGAAGGGATTTCGCGAATCTGAGACTGAAGTATTGAAGCAGCTAACATCTATGGGTCGGCTCGTGGTATG
TGCTGGAGATGGTGCAGTTCAAAGTTCAACCAACCTGGGACTTCTGAGACATGGGATCTCACTATGGATTGATGTACCCTTAGACATTGTTGCAAGGGGG
ATGGTTGAAGACAAGACTCAACTTGCTGCATCAGAATCTCATTCAGAGGTGTTAGAGCAGGTAGTCGCTACATATGAAGAGCTGAGAGCTGGTTATGCTA
CAGCTGATGCAAAAATTTCGCTCCAGAATATAGCTGTCAAATTAGGTTATGATGAACTGGATTCGGTAACAACGGAGGACTTGGCATTGGAGGTACTCAA
GGAGATAGAAAAACTGACAAGAGTAAAGAAAATGATGGAAGAGGCAGCAAGACCTTTTTAG
AA sequence
>Potri.017G062800.2 pacid=42813389 polypeptide=Potri.017G062800.2.p locus=Potri.017G062800 ID=Potri.017G062800.2.v4.1 annot-version=v4.1
MEITKATATSTLAAAIHNLSLSSLSSTIRPRPRPYSHSGFSKFPLVSRPTSLTATCSLPNETTTSTTKVAGADTSLQVKKRAADLSPELKGTSIFLLGMR
GPLKTNLGKLLADALRYYYFDSDSLVEEAAGGEFAARSLKERDEKGFRESETEVLKQLTSMGRLVVCAGDGAVQSSTNLGLLRHGISLWIDVPLDIVARG
MVEDKTQLAASESHSEVLEQVVATYEELRAGYATADAKISLQNIAVKLGYDELDSVTTEDLALEVLKEIEKLTRVKKMMEEAARPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
0 1 SK1
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
1.00 0.9913
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
1.41 0.9890 PtrTrxm3
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Potri.003G119200
[exp]
1.73 0.9862
AT3G58140 phenylalanyl-tRNA synthetase c... Potri.013G105200
[exp]
2.44 0.9839
AT5G13410 FKBP-like peptidyl-prolyl cis-... Potri.001G068300
[exp]
2.82 0.9847
AT5G45170 Haloacid dehalogenase-like hyd... Potri.015G112500
[exp]
3.60 0.9795
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
4.00 0.9804 APG2.1
AT2G31890 ATRAP RAP (.1) Potri.017G001600
[exp]
4.35 0.9768
AT5G39210 CRR7 chlororespiratory reduction 7 ... Potri.004G120300
[exp]
4.58 0.9816
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Potri.001G301000
[exp]
5.47 0.9800 NHD1.2

Potri.017G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.