Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 427 / 7e-145 Plant protein of unknown function (DUF247) (.1) AT3G50180 86 / 1e-17 Plant protein of unknown function (DUF247) (.1) AT3G50130 83 / 1e-16 Plant protein of unknown function (DUF247) (.1) AT3G50170 82 / 2e-16 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 81 / 5e-16 Plant protein of unknown function (DUF247) (.1) AT3G50150 76 / 2e-14 Plant protein of unknown function (DUF247) (.1) AT3G50160 76 / 3e-14 Plant protein of unknown function (DUF247) (.1) AT3G50190 75 / 5e-14 Plant protein of unknown function (DUF247) (.1) AT2G36430 74 / 9e-14 Plant protein of unknown function (DUF247) (.1) AT3G50140 74 / 1e-13 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024100 [exp] 686 / 0 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 678 / 0 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 582 / 0 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.009G085300 [exp] 570 / 0 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 545 / 0 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 533 / 0 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 360 / 2e-118 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 82 / 2e-16 AT4G31980 232 / 3e-69 unknown protein Potri.004G187100 [exp] 80 / 8e-16 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023185 [exp] 345 / 2e-112 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 337 / 2e-109 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 199 / 4e-57 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 160 / 8e-43 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 130 / 4e-32 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 130 / 6e-32 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 112 / 3e-26 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 104 / 1e-23 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 94 / 3e-20 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 83 / 1e-16 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.017G062900.1 pacid=42813979 polypeptide=Potri.017G062900.1.p locus=Potri.017G062900 ID=Potri.017G062900.1.v4.1 annot-version=v4.1 ATGACAGGTTCTTCGAGCTCCAAATTCGACGAGTTTCAATGGGTCAATACCATCCGTCGAACGCTCGAAAGGGAACTGGAAGACGATACTGATCAAATTC CGGTGTGCATTTATACTGTCCCCAAAACCCTAATGTCTAGCCATCCCGACTTTTATACTCCACATCAACTTCCACTTGGTCCATACCATTATTGGCGTCC AGATCTAAGTGAGATGGAGAGCTACAAGCTTTCGGCAGTAAAAAAGCTCCAAAATCAATTTCAAAGCGACAACTTTCAGAATCTTGTCGAGAAATTGGTA AAGCTTGAACCAAAGATTCGGGCATGCTACCACAATTACTTAAATCTCAATGCTGAAACACTAGCATGGATGATGGCTTTGGATGCTTCGTTTTTACTCG AGTTTCTTCAAATTTATTCCGTCAAAGAAAATGAAGTTTTATGGACGATTTCCTCGAGGATGACACATTTGCTTGATTATTCAAAGAGGAAATCGGCACA TTATGTAATTCTCAGGGATATAGTGATGATGGAGAATCAAATTCCACTATTTGTATTGAGAAAGGTGCTTAAGTTTCTGCTCATGTCAGCAGAATCAGCT GATGACATGCTGATTTCCATGTTACTAGGGTTATGTAAAGAGCTCTCTCCTTTCAAGATGGTAGAGTTGGAAAAGACTAAAGTCTTGGAGCATTCCCACT TGCTAGACTCTTTGTATGACATTATGGTGCCCAGAGAGGAAGAACTACCGATTGAGATAACAATTGAAGATGTTGAAGAAAATCGTTCTGAAACTGAGCA AGAAAACGAAGGATCTGGAATTGATTTGAATCTTGTGAAAAGTTTTTTGAGCGAGCTCTGGAATACGGCTTCTGAACTAAACATAGGCCCAATGCGTTTC CTCAAGAACGCTTCAGCATCAATGACAAGCAAATTAGGATTTTCCTGGACAATACTAAGTAAACTTCTGAATCTATCAGCCTCAAATTATGGCATTGAGC CAGAAAATGAGAGCGCCAGAAATAACCAGCAGCTGCCACCTTTGGTAGAAGAGATCGCAATTCCTTCAGTCACTCAGCTCTCTAATACTGGTGTCCGTTT TTTACCTACCAAGGGTAACATCTCCACCATTAACTTCGACACGGAGAAAGCTGCATTTTACATCCCCATGATTAGTTTAGATGCAAACAGTGAGTTTATC TTTAGAAACTTAGTGGCATATGAAATATCGCATGCATCAGGACCCATGATTTTTGCTCGGTACATTGAATTGATGAATGGGATTATTGACACCGAGGAAG ATGTAAGATTGCTTAGAGAGAGAGGCATTATTTTCAACCACTTGAAGAGTGATCAAGAGGTGGCAAACCTATGGAATGGGATGAGCAAGTGCAAGTCCAT GAGGCTGACAAAAGCTCCGTTCTTAGATAAGGTGATTGAAGATGTTAACAAGTATTACAACAGCCGATGGAAGGTCAAGATACGAAAATTTATGAAGCAC ACTGTGTTTTGTTCATGGCAGTTTCTCACAGTGCTCGCTTCCATTCTGCTCTTGCTCTTAATGGCTGTGGAATCATTTTGCTCAGTTTATAAATGCAATA GAATAATCTAA
AA sequence Show only first row Show all	>Potri.017G062900.1 pacid=42813979 polypeptide=Potri.017G062900.1.p locus=Potri.017G062900 ID=Potri.017G062900.1.v4.1 annot-version=v4.1 MTGSSSSKFDEFQWVNTIRRTLERELEDDTDQIPVCIYTVPKTLMSSHPDFYTPHQLPLGPYHYWRPDLSEMESYKLSAVKKLQNQFQSDNFQNLVEKLV KLEPKIRACYHNYLNLNAETLAWMMALDASFLLEFLQIYSVKENEVLWTISSRMTHLLDYSKRKSAHYVILRDIVMMENQIPLFVLRKVLKFLLMSAESA DDMLISMLLGLCKELSPFKMVELEKTKVLEHSHLLDSLYDIMVPREEELPIEITIEDVEENRSETEQENEGSGIDLNLVKSFLSELWNTASELNIGPMRF LKNASASMTSKLGFSWTILSKLLNLSASNYGIEPENESARNNQQLPPLVEEIAIPSVTQLSNTGVRFLPTKGNISTINFDTEKAAFYIPMISLDANSEFI FRNLVAYEISHASGPMIFARYIELMNGIIDTEEDVRLLRERGIIFNHLKSDQEVANLWNGMSKCKSMRLTKAPFLDKVIEDVNKYYNSRWKVKIRKFMKH TVFCSWQFLTVLASILLLLLMAVESFCSVYKCNRII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02645			Plant protein of unknown funct...		Potri.017G062900 [exp]	0	1
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.001G282800 [exp]	3.00	0.7934
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	12.72	0.7906
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G007300 [exp]	13.85	0.6862
AT4G02550			unknown protein		Potri.006G191850 [exp]	19.59	0.7361
AT4G34210		ASK11	SKP1-like 11 (.1)		Potri.012G085200 [exp]	33.76	0.6747
AT2G27940			RING/U-box superfamily protein...		Potri.010G245801 [exp]	44.69	0.6466
					Potri.014G125800 [exp]	56.49	0.7095
					Potri.005G157601 [exp]	58.99	0.6033
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	61.18	0.7020	SAP.1
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	65.77	0.6978

Compare expression of checked genes

Potri.017G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.