Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) AT5G41100 365 / 4e-118 unknown protein AT3G26910 364 / 2e-117 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324800 [exp] 980 / 0 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 528 / 2e-180 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G166300 [exp] 513 / 1e-174 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032001 [exp] 668 / 0 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1) Lus10035172 [exp] 627 / 0 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1) Lus10002580 [exp] 438 / 1e-145 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1) Lus10001808 [exp] 416 / 4e-135 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [poplar] [flax] Golgi-transport PF03114 [poplar] [flax] BAR BAR domain
Representative CDS sequence Show only first row Show all	>Potri.017G063000.4 pacid=42813069 polypeptide=Potri.017G063000.4.p locus=Potri.017G063000 ID=Potri.017G063000.4.v4.1 annot-version=v4.1 ATGAAGAATAAACTGAGAGGATTTGGACTGAAAAGAAGCGAAACAAAGGAAAAAATTGATTTATTACCTCCTGCTCAGTTAGATGAGCTCGCTCAAGCTG CTCGGGACATGCAAGACATGAGAAATTGCTATGATAGTTTACTTTTCGCAGCTGCTGCAACAGCAAACAGTGCATATGAATTCTCAGAGTCATTGCGGGA AATGGGTTCTTGTTTGTTAGAGAAAACAGCATTACATGATGATGAAGAAAGTGGCAAGGTTTTGCTAATGTTGGGGAATGTGCAGTTTGAACTTCAAAAA CTTGTTGATAGTTATCGGTCTCATATATTCCTGACAATTACAAATCCATCTGAATCCCTGCTCAATGAACTTCGGACAGTTGAGGATATGAAGCGACAAT GTGATGAAAAAAGAAATGTCTATGAATACATGGTGGCACAACAAAAGGACAAGGGAAGATCAAAAGGTGGGAAAGATGAAAGTACTACTTTGCAGCAATT GCGATCAGCTCGTGAAGAATATGACGAGGAGGCAACCCTATGTGTTTTTCGGTTGAAATCTCTGAAACAGGGACAGTCTCGAAGCCTTCTAACACAGGTA GCACGTCATCATGCTGCTCAGTTGAATTTCTTTCAGAAGGGACTTAAATCACTTGAGACAGTTGAACCCCACGTAAGACTGATTACAGAACATCAACACA TTGATTACCATTTCAGTGGACTTGAAGATGATGGTAGAGAAGATGGTGAGGATTATGGTGAGGATGTCGATGATACATATGAAGGCAGGGAATTGAGTTT TGACTACAGAGCAAATAATCAGGGGCATGCTGTTTCTGCAGCAAGGAATTCTATGGAGGTTGATGAAGAGGATCTTTCATTCCCCCAAGCACCAGCAGCA GAAAATGTAGAGTTAAACCCAGACAAAACCCCTGGTGGTTTCCATTTCCCAATCAGAGAACCAAGAGGAGGCAGCCATTCAGCACCAATTTTTCCAGAAA GAAAACCTGATCCAGTTGAAAGAATAAGACAAATACAGAAATCATCGAGGAAGTCCAACACATATGTGCTGCCCACACCTGTTGATGCAAAGGGTGTGAT CTCTTCAAGAGCAAGCGGTTCAGTTCCCAACACAAGGCAAATAGACATCAGTGGGCGCACTCACTATTTGTCTCATTCTTCCCCATTGGAACAGAAGAAG AATGAGAAAGATTCTGGCGATGGTCACCTGCCAGAGTTCACCCCTTCAAAAGAACGTTCAGGACATAAAGAGAGCAACAATCCTAATGCCTCCACCCAAT TACCCCGTCCTTTAGTCGGAGGAATCTCATTTCCACAGCTTGATGTTTACAATGCATCTGATAACAAAAAAATTAAACGGCAATCCTTCTCTGGTCCGAT AACCAGTAAGCCATGGTCAATGAAATTGGGCTTATCATCATCCAGTGGTCCCATTTCTGCTACTGAACTTTCACAAGAAGTTTCTGGAGTGCTTGCTCAT GTTGCAAATCCTCAGCCTTCTACATCCCCCAAAGTATCCCCTAGTACATCACCTCCTCTTGTTTCTTCACCCAGGATAAGCGAGCTTCATGAACTTCCAA GGCCACCAGGTAATTTAGCAGCCAAAGCTGCAAAATCTCTGGGGCCGATTGGACACTCTGCTCCATTGGTCAGAAATCCTGAGCTTTCTGGAACAAACAA GATTTCTTCAGGGGCAGCAAATTTGGCATCACCTCTTCCCACGCCACCGTTGATGGTCCCAACAAGTTTCTCAATACCCTCAATTAGTCCAAGAACAATG TCTGTACATGTTTCTAAGCTTTTGGTTTCTTCTCAACTACTGGATAAACCTGGGGAAGTTGATTCTCCTCCACTGACACCGATTTCCCTTACAAATATGA GGCAAGCACCTGCCATTTCAGAATCGATACCGCATTCTGGTCAAATTAGAGGTAATGAGATATCATGTTCATTAATTTTCTGTCAACTGAGAATCAAGCT AGCAATACTTTTGTGCAGCTAA
AA sequence Show only first row Show all	>Potri.017G063000.4 pacid=42813069 polypeptide=Potri.017G063000.4.p locus=Potri.017G063000 ID=Potri.017G063000.4.v4.1 annot-version=v4.1 MKNKLRGFGLKRSETKEKIDLLPPAQLDELAQAARDMQDMRNCYDSLLFAAAATANSAYEFSESLREMGSCLLEKTALHDDEESGKVLLMLGNVQFELQK LVDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMVAQQKDKGRSKGGKDESTTLQQLRSAREEYDEEATLCVFRLKSLKQGQSRSLLTQV ARHHAAQLNFFQKGLKSLETVEPHVRLITEHQHIDYHFSGLEDDGREDGEDYGEDVDDTYEGRELSFDYRANNQGHAVSAARNSMEVDEEDLSFPQAPAA ENVELNPDKTPGGFHFPIREPRGGSHSAPIFPERKPDPVERIRQIQKSSRKSNTYVLPTPVDAKGVISSRASGSVPNTRQIDISGRTHYLSHSSPLEQKK NEKDSGDGHLPEFTPSKERSGHKESNNPNASTQLPRPLVGGISFPQLDVYNASDNKKIKRQSFSGPITSKPWSMKLGLSSSSGPISATELSQEVSGVLAH VANPQPSTSPKVSPSTSPPLVSSPRISELHELPRPPGNLAAKAAKSLGPIGHSAPLVRNPELSGTNKISSGAANLASPLPTPPLMVPTSFSIPSISPRTM SVHVSKLLVSSQLLDKPGEVDSPPLTPISLTNMRQAPAISESIPHSGQIRGNEISCSLIFCQLRIKLAILLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33490			hydroxyproline-rich glycoprote...		Potri.017G063000 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	6.32	0.8675
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	10.95	0.8607	Pt-RPB1.1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	11.61	0.8502
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	15.36	0.8456
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	17.34	0.8354	HAF902
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	18.33	0.8362
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	20.00	0.8376
AT1G19290			Pentatricopeptide repeat (PPR)...		Potri.014G040200 [exp]	21.35	0.8319
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	22.24	0.8212
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Potri.004G133600 [exp]	22.97	0.8149

Compare expression of checked genes

Potri.017G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.