Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 505 / 2e-180 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 501 / 1e-178 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 400 / 4e-139 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325200 [exp] 695 / 0 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G061100 [exp] 520 / 0 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012556 [exp] 583 / 0 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10035175 [exp] 556 / 0 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10032006 [exp] 551 / 0 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10002582 [exp] 462 / 7e-163 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10011337 [exp] 429 / 1e-150 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10041535 [exp] 222 / 4e-72 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.017G063500.1 pacid=42813920 polypeptide=Potri.017G063500.1.p locus=Potri.017G063500 ID=Potri.017G063500.1.v4.1 annot-version=v4.1 ATGGCTCTTAAAGCTGTTCATGTCTCTGATGTTCCCAATCTTGACCATGTCCCTGACAATGCCTCTCTTTCTCTCTACTCAACTCGTCTCTCCAAAGGAG TTGAGATGAATAGAGCAGCTACGTTCAAGATGCCAAAGTTTATGGTGGCTGGACATAGAGGGAATGGAATGAATGTATTGCAATCAACAGATGGTAGGAT GAAAGAGATTAAAGAGAACTCCATTATGTCTTTTAATAGCGCTGCCAAACACCCCATTGATTTCATCGAATTTGATGTTCAGGTGACAAAAGATGACTGC CCAGTCATTTTCCATGACAACTTCATCCTCTCTGAAGATAATGGCACTATTTTTGAGAAGAGGGTGACAGAACTTTGCCTATCTGAATTCCTATGCTTTG GACCCCAAAAAGAAGGAAGGGCTGGCAAATCTTTACTCAGGAAAACTAAAGAAGGAAAAATACTGGAATGGAATGTAGAGAAAGATGACTCCTTATGCAC CTTGCAAGATGCATTTCAACAAGTGGAGTCCTCACTTGGCTTTAACATTGAATTAAAATTTGATGACCACATTGTCTACCAGCAGGATTATCTCATTCGT GTTCTTCAAGCCATCTTGCAGGTGGTATTTGATCATGGTAAGGATAGGCCTGTTATTTTCTCATCATTCCAACCTGATGCAGCACTGCTTGTCAGAAAAC TGCAGAGCACCTTCCCTGTTTACTTTTTGACAAATGGGGGTACTGAGATTTTCTATGATGCAAGGAGAAATTCCTTGGAGGAGGCTATAAAGGTGTGCTT GGAGGGTGGTTTGCAGGGGATTGTATCGGAGGTCAAAGGGGTTTTTAGAAATCCTGGGGCAGTGAACAAGATCAAGGATGCGAAGCTTTCTCTTCTAACT TACGGAAAACTGAATAATGTATCAGAAGCTGTTTACATGCAACATTTAATGGGTATAGATGGAGTGATAGTTGATCTGGTTCAAGAAATTACTGAAGCGG TATCTGATTTGATAAAGCCATCTAAGATGGGAGAAGCAGAGAGTCTAGCAGAAGGGGATGGAGAGATGGAAGTAAAATCAAAGCCTCAATTCTCACAGAT GGAGCTTTCATTTCTTTTAAAGCTCATCCCAGAATTGATACAGCTTTAG
AA sequence Show only first row Show all	>Potri.017G063500.1 pacid=42813920 polypeptide=Potri.017G063500.1.p locus=Potri.017G063500 ID=Potri.017G063500.1.v4.1 annot-version=v4.1 MALKAVHVSDVPNLDHVPDNASLSLYSTRLSKGVEMNRAATFKMPKFMVAGHRGNGMNVLQSTDGRMKEIKENSIMSFNSAAKHPIDFIEFDVQVTKDDC PVIFHDNFILSEDNGTIFEKRVTELCLSEFLCFGPQKEGRAGKSLLRKTKEGKILEWNVEKDDSLCTLQDAFQQVESSLGFNIELKFDDHIVYQQDYLIR VLQAILQVVFDHGKDRPVIFSSFQPDAALLVRKLQSTFPVYFLTNGGTEIFYDARRNSLEEAIKVCLEGGLQGIVSEVKGVFRNPGAVNKIKDAKLSLLT YGKLNNVSEAVYMQHLMGIDGVIVDLVQEITEAVSDLIKPSKMGEAESLAEGDGEMEVKSKPQFSQMELSFLLKLIPELIQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.017G063500 [exp]	0	1
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	9.79	0.6777
AT3G54000			unknown protein		Potri.016G105000 [exp]	14.07	0.6562
					Potri.004G036375 [exp]	14.96	0.6684
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247900 [exp]	16.12	0.6918	SGGN1.2
AT3G17120			unknown protein		Potri.010G148200 [exp]	45.46	0.6097
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	61.31	0.6429
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.005G225600 [exp]	76.47	0.6229
AT4G00770			unknown protein		Potri.014G077400 [exp]	83.46	0.5969
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	86.16	0.6304
					Potri.015G025701 [exp]	107.93	0.6111

Compare expression of checked genes

Potri.017G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.