Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 673 / 0 DHHC-type zinc finger family protein (.1) AT5G41060 576 / 0 DHHC-type zinc finger family protein (.1.2) AT3G48760 463 / 4e-161 DHHC-type zinc finger family protein (.1) AT4G24630 407 / 2e-140 DHHC-type zinc finger family protein (.1) AT5G50020 373 / 4e-126 DHHC-type zinc finger family protein (.1.2) AT3G56930 370 / 1e-124 DHHC-type zinc finger family protein (.1.2) AT5G05070 334 / 2e-111 DHHC-type zinc finger family protein (.1) AT2G40990 312 / 6e-103 DHHC-type zinc finger family protein (.1) AT3G56920 300 / 5e-99 DHHC-type zinc finger family protein (.1) AT3G04970 87 / 1e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325400 [exp] 788 / 0 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 545 / 0 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 525 / 0 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 424 / 1e-146 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 423 / 3e-146 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 413 / 3e-142 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 405 / 3e-139 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 367 / 2e-125 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 367 / 4e-123 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 697 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 697 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 447 / 8e-155 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 445 / 6e-154 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 402 / 1e-137 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 397 / 5e-135 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 356 / 1e-120 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 352 / 8e-119 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 348 / 2e-116 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10035395 [exp] 330 / 1e-106 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G063800.1 pacid=42813967 polypeptide=Potri.017G063800.1.p locus=Potri.017G063800 ID=Potri.017G063800.1.v4.1 annot-version=v4.1 ATGTATGTGGTGCCACCACCAAAGGGATCATCGGATACTGGATCCAGTGATTTACGGGTTTATCAAACTTGGAAAGGCAGTAACATATTTTTTCTTCAAG GGAGGTTTATTTTTGGACCAGATGTGAGATCGCTTGCATTGACTACACTCCTGATAGTTGTTCCAGTTGCAGTGTTCTGTATCTTTGTTGCCAGAAAGCT GATGGATGATTTTTCAGATGATTGGGGAATATCAATAATGGTCATTGCTGTTGTGTTCACTATTTATGATTTAGTTCTTCTCCTGCTAACATCTGGAAGG GATCCTGGCATAATTCCACGCAATGCATATCCACCAGAACCGGATGGCTTTTATGGGAGTGCAGATGTTGGGTCCGGTCAAACTCCACAATTACGCCTGC CACGCATTAAGGAGGTGGAATTCAATGGAATGACTGTGAAAGTCAAGTATTGTGATACTTGCATGCTTTACAGACCACCTCGCTGCTCGCATTGTTCAAT ATGCAATAACTGTGTAGAAAGATTTGACCATCACTGCCCTTGGGTTGGGCAGTGTATTGGCTTGAGAAATTATCGATTCTTCTTCATGTTTGTCTTCTCA ACGACCCTTCTCTGTATATATGTTTTTTCATTCTGCTGGGTCTACATTAGGAAGATCATGGGATCAGAGAACTCATTAATTTGGAAAGCAATGATCAAAA CCCCTGCCTCGATTGTTTTAATAGTTTATACTTTCATATCAATGTGGTTTGTCGGTGGCCTTACTGCCTTCCATTTGTATCTCATCTGCACAAATCAGAC TACTTATGAGAATTTCAGATATCGCTATGACAGGCACGCAAATCCCTTTTATAAAGGAGTGGTAGAGAACTTGAAGGAAATATTTTGCTCCAGTATCCCC CCATCCAAGAACAATTTCAGGGCAAAGGTGCCCGGGGAACCTGCACTACCAGCTCGAACACTTGGTAGGGGCTTCATGAGTCCAAATATGGGTAAAGCTG TAGGTGACATGGAAATGGGTAGGAAAACAGTATGGGGAGACATGAATGCTATGACTGATGGCGAAGGACAACTTGCTGACAACGATCGGCTGAACATAAA AGATGGTGAACTAGATGAATTATCCCTGGATATCAGGACCACAGTAGATGAAGTTGGAGACCGTGGTGGAATACATCCTAGGCGATCGAGTTGGGGAAGA AAGAGTGGAAGCTGGGAGATGTCACCTGAAGTTCTTGCCTTGGCAGCTAGAGTGGGGGAATCCAACCGTATGGGTGGTGGGAGCAGCAGTGGCAGCTTGA CAACTGAGAACCAACAATCATAG
AA sequence Show only first row Show all	>Potri.017G063800.1 pacid=42813967 polypeptide=Potri.017G063800.1.p locus=Potri.017G063800 ID=Potri.017G063800.1.v4.1 annot-version=v4.1 MYVVPPPKGSSDTGSSDLRVYQTWKGSNIFFLQGRFIFGPDVRSLALTTLLIVVPVAVFCIFVARKLMDDFSDDWGISIMVIAVVFTIYDLVLLLLTSGR DPGIIPRNAYPPEPDGFYGSADVGSGQTPQLRLPRIKEVEFNGMTVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFS TTLLCIYVFSFCWVYIRKIMGSENSLIWKAMIKTPASIVLIVYTFISMWFVGGLTAFHLYLICTNQTTYENFRYRYDRHANPFYKGVVENLKEIFCSSIP PSKNNFRAKVPGEPALPARTLGRGFMSPNMGKAVGDMEMGRKTVWGDMNAMTDGEGQLADNDRLNIKDGELDELSLDIRTTVDEVGDRGGIHPRRSSWGR KSGSWEMSPEVLALAARVGESNRMGGGSSSGSLTTENQQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	0	1
AT3G11760			unknown protein		Potri.016G067600 [exp]	1.00	0.8314
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	4.89	0.8068
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	6.48	0.7603
AT2G30700			unknown protein		Potri.017G018000 [exp]	6.70	0.7459
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	6.92	0.7422
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	7.48	0.7516
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	7.74	0.7324
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	9.16	0.7650	Pt-NPGR2.1
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	13.85	0.7736
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.002G240232 [exp]	13.96	0.7658

Compare expression of checked genes

Potri.017G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.