Plant FIBer expression Database

Potri.017G063900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27060 561 / 0 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
AT3G23580 520 / 0 RNR2A ribonucleotide reductase 2A (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G329700
[exp]
661 / 0 AT3G27060 557 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Potri.008G201500
[exp]
523 / 0 AT3G23580 576 / 0.0 ribonucleotide reductase 2A (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035209
[exp]
606 / 0 AT3G27060 562 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Lus10032043
[exp]
600 / 0 AT3G27060 559 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Lus10004435
[exp]
522 / 0 AT3G23580 556 / 0.0 ribonucleotide reductase 2A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00268 Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence
>Potri.017G063900.2 pacid=42813295 polypeptide=Potri.017G063900.2.p locus=Potri.017G063900 ID=Potri.017G063900.2.v4.1 annot-version=v4.1
ATGCCTGCAATCCCAGAAGAACCCCTTCTGGCTGAAAACCCAGACCGGTTCTGTATGTTCCCCATTCAGTACCCATCAATCTGGGAGATGTACAAGAAAG
CTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCGTCGGATATCCGCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGT
CCTTGCCTTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTTCATGAAAGAGGTCCAAGTCTCGGAGGCGCGTGCTTTTTACGGA
TTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGTCTGTTTCATGCTA
TCGAAACGGTGCCGTGTGTGGCTAAGAAGGCACGGTGGGCCTTGCGGTGGATTGACGGGAGCGAGAGTTTCGCGGAGAGGCTAGTTGCTTTTGCTTGCGT
GGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTGATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCGCGA
GATGAAGGGCTTCATTGTGATTTCGCGTGCCTTCTCTACAGCTTGCTGAGGAAGAAGCTGAGTGAGGAGCAAGTGAAGGGGATAGTGAAGGATGCAGTGG
ATATTGAGAGGGAGTTTGTGGTGGACGCGCTGCCATGCGCGTTGGTAGGGATGAACGGGGAGTTGATGAGTCAGTATATTGAGTTCGTAGCTGATAGGCT
GTTGGGTGCGCTTGGGTGCGGGAAGGTGTACAATGTGGCTAATCCATTCGATTGGATGGAGTTGATATCTTTGCAAGGGAAGACTAATTTCTTCGAGAAA
AGAGTAGGAGAGTATCAAAAGGCCTCAGTTATGTCTAGTATTAATGGGAATGGTGGGAATCATGTGTTTAAGATGGATGAAGATTTTTAG
AA sequence
>Potri.017G063900.2 pacid=42813295 polypeptide=Potri.017G063900.2.p locus=Potri.017G063900 ID=Potri.017G063900.2.v4.1 annot-version=v4.1
MPAIPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWENLTPDEKHFISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYG
FQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKARWALRWIDGSESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISR
DEGLHCDFACLLYSLLRKKLSEEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVANPFDWMELISLQGKTNFFEK
RVGEYQKASVMSSINGNGGNHVFKMDEDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
0 1
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
1.41 0.9373
AT4G13690 unknown protein Potri.003G177900
[exp]
1.73 0.9121
AT4G33400 Vacuolar import/degradation, V... Potri.002G126500
[exp]
5.83 0.9133
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Potri.016G070800
[exp]
6.00 0.9059
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.019G040000
[exp]
8.48 0.8855
AT2G38720 MAP65-5 microtubule-associated protein... Potri.003G192400
[exp]
8.94 0.8826
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Potri.007G108200
[exp]
9.16 0.8927
AT5G65360 Histone superfamily protein (.... Potri.014G096900
[exp]
9.74 0.9068 HTR906
AT5G05510 Mad3/BUB1 homology region 1 (.... Potri.008G071900
[exp]
10.00 0.8799
AT1G14900 HMGA high mobility group A (.1) Potri.010G109600
[exp]
11.35 0.8671

Potri.017G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.