Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67400 372 / 2e-129 RHS19 root hair specific 19 (.1) AT5G14130 367 / 1e-127 Peroxidase superfamily protein (.1) AT3G49960 363 / 9e-126 Peroxidase superfamily protein (.1) AT4G37530 362 / 1e-125 Peroxidase superfamily protein (.1.2) AT4G30170 353 / 8e-122 Peroxidase family protein (.1) AT2G18980 352 / 1e-121 Peroxidase superfamily protein (.1) AT4G37520 350 / 7e-121 Peroxidase superfamily protein (.1.2) AT4G17690 248 / 9e-81 Peroxidase superfamily protein (.1) AT3G21770 246 / 4e-80 Peroxidase superfamily protein (.1) AT1G05260 245 / 2e-79 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329200 [exp] 516 / 0 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.018G089900 [exp] 370 / 9e-129 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 362 / 2e-125 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.007G074700 [exp] 272 / 5e-90 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 254 / 3e-83 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 251 / 7e-82 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 239 / 5e-77 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 238 / 1e-76 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 236 / 5e-76 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012540 [exp] 434 / 1e-153 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10032035 [exp] 420 / 4e-148 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10011079 [exp] 368 / 2e-127 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 358 / 6e-124 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10035204 [exp] 300 / 8e-102 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10039445 [exp] 249 / 6e-81 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10027163 [exp] 247 / 4e-80 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10010716 [exp] 246 / 7e-80 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10039681 [exp] 242 / 3e-78 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10013955 [exp] 239 / 7e-76 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.017G064100.1 pacid=42814372 polypeptide=Potri.017G064100.1.p locus=Potri.017G064100 ID=Potri.017G064100.1.v4.1 annot-version=v4.1 ATGGAGAGAGGTTATATGCTTCTGCTGGTGGTTTTGATCATTGCCATAGGAAGGGGAGAGGGACAACTAGTGGAAAACTTCTACAGCTCTAGCTGTCCTA ACGTGGAAGGTATAGTGAGGCAGGCTGTTTCCACAAAGTTCAGGCAGACATTCACTACAATCCCAGCAACTCTTCGTCTGTTTTTTCATGACTGCTTTGT GACGGGTTGTGATGCTTCCACCATGGTTTCTTCACCAAATGGAGACGCAGAGAAGGACGCTCCAGACAATCTTTCTCTAGCAGGAGATGGATTCGATACC GTAGTGAAGGCAAAACAAGCAGTGGAAGCAGCTTGCCCCAAAGTAGTCTCCTGTGCAGACATTTTAGCATTAGCTGCTAGGGATGTTGTTGTCCTGGCTG GAGGTCCTTCATTCAACGTAGAATTAGGACGTCGTGATGGCATGGTTTCTCAAGCATCACTTGTGAAAGGAAATTTACCAGATCCCGACTTCACTCTTTC TCAACTTAACGCTATGTTTGCTAAAAACAACCTTAACCAGATTGATATGATTGCACTATCAGGAGCCCACACACTAGGCTTCTCCCACTGCAACCGCTTT GCGAAGAGACTCTACTCTTTTTCCTCGTCCTCTCCCGTTGACCCTTCTCTAGACGCAGAGTATGCCCAGCAGTTGATGAATGCCTGTCCTAGAAATGTAG ACCCCAGCATAGCCATTGACATGGACCCTGTAACCTCACGAACCTTTGACAATGTGTATTTCCAAAATCTGGTTTCTGGTAAAGGATTGTTCACTTCAGA TGAAGTGCTGTTTAGCGATCCAGCTTCTCAGCCAACTGTCAATGATTTTGCTAAGAACTCGGGCGATTTTAATGGAGCTTTTGCGACTGCTATGAGAAAG CTTGGAAGGGTTGGAGTTAAGACAGGTAGCCAAGGAACGATCAGGACAGACTGTACAGTCATTAATTCTTGA
AA sequence Show only first row Show all	>Potri.017G064100.1 pacid=42814372 polypeptide=Potri.017G064100.1.p locus=Potri.017G064100 ID=Potri.017G064100.1.v4.1 annot-version=v4.1 MERGYMLLLVVLIIAIGRGEGQLVENFYSSSCPNVEGIVRQAVSTKFRQTFTTIPATLRLFFHDCFVTGCDASTMVSSPNGDAEKDAPDNLSLAGDGFDT VVKAKQAVEAACPKVVSCADILALAARDVVVLAGGPSFNVELGRRDGMVSQASLVKGNLPDPDFTLSQLNAMFAKNNLNQIDMIALSGAHTLGFSHCNRF AKRLYSFSSSSPVDPSLDAEYAQQLMNACPRNVDPSIAIDMDPVTSRTFDNVYFQNLVSGKGLFTSDEVLFSDPASQPTVNDFAKNSGDFNGAFATAMRK LGRVGVKTGSQGTIRTDCTVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	0	1
					Potri.002G070101 [exp]	1.41	0.8885
AT3G60270			Cupredoxin superfamily protein...		Potri.014G049600 [exp]	2.64	0.8210
AT2G22590			UDP-Glycosyltransferase superf...		Potri.001G030600 [exp]	4.00	0.8336
					Potri.002G231250 [exp]	5.47	0.8555
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	27.65	0.8480
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.005G074500 [exp]	33.40	0.8237
AT3G58000			VQ motif-containing protein (....		Potri.016G046000 [exp]	46.57	0.8158
					Potri.014G151101 [exp]	56.74	0.7633
					Potri.005G190101 [exp]	145.47	0.7781
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	191.06	0.7360

Compare expression of checked genes

Potri.017G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.