Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01930 806 / 0 Major facilitator superfamily protein (.1.2) AT5G14120 798 / 0 Major facilitator superfamily protein (.1) AT5G50520 490 / 2e-168 Major facilitator superfamily protein (.1) AT5G50630 490 / 2e-168 Major facilitator superfamily protein (.1) AT2G28120 306 / 2e-96 Major facilitator superfamily protein (.1) AT4G34950 295 / 3e-92 Major facilitator superfamily protein (.1) AT1G80530 265 / 8e-81 Major facilitator superfamily protein (.1) AT2G39210 175 / 2e-47 Major facilitator superfamily protein (.1) AT2G16660 158 / 1e-41 Major facilitator superfamily protein (.1) AT2G34350 147 / 4e-38 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329100 [exp] 950 / 0 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 667 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 306 / 1e-96 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 300 / 6e-94 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 293 / 9e-92 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 290 / 3e-90 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 290 / 4e-90 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 278 / 5e-86 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 231 / 4e-68 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035203 [exp] 825 / 0 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 823 / 0 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 603 / 0 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 544 / 0 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 291 / 1e-90 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 287 / 4e-89 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 274 / 3e-84 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 263 / 6e-80 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 260 / 4e-79 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 176 / 6e-48 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.017G064201.1 pacid=42813777 polypeptide=Potri.017G064201.1.p locus=Potri.017G064201 ID=Potri.017G064201.1.v4.1 annot-version=v4.1 ATGATAGGCAAGTTGGCAGATAGATTTTCTGGATTCATCAATAATAGATGGCTAGTTTTTGTGGCTGCAATGTGGATACAATCATGTGCAGGAATTGGTT ATTTATTTGGTAGCATATCACCTGTTATAAAGAGCTCATTGAACTACAATCAAAGGCAGCTTGCAAGTTTAGGTGTTGCTAAAGATCTTGGTGGTAGTGT TGGTTTCTTGGCCGGTAGTTTATCAGAAATCTTGCCTTTATGGGGTGCTTTGTTAGTTGGTGCTTTGCAGAATCTTGTTGGATACGGTTGGGTTTGGCTT GTGGTAACAGGCAGAGCTCCTGTTTTGCCATTATGGGCTATGTGCATTCTTATATTTATAGGGAACAATGGCGAAACCTACATCAACACAGCTGCTCTAG TTTCTTGTGTGCAAAACTTTCCAAAGAGCCGTGGTCCTGTTGTGGGAATACTAAAAGGCTTTGCAGGATTAAATGGTGCAATTTTGACCCAAATATATAC AATGATACATTCCCCTGATCATGCATCTCTCATTTTTATGGTTGCAGTTGGGCCTGCAATGGTAGTCATTGCTTTAATGTTCATTGTCAGACCTGTTGGA GGTAACAGACAAGTTCGACCATCAGATGGAACAAGTTTTACATTTGTATATACAGTCTGCCTTCTACTAGCTGTATACTTGATGGGGGTTATGCTTCTTG AAGATCTAGTTGATTTGAGTCGCATCGTGGTTGTAATTTTTACAATAGTTTTGTTTGTCCTCCTTTTGATTCCTGTTGTGATTCCTGTGTCATTGAGTTT TTTTCTTGATCCAAGAGGTCCAGCAGAAGAGCCCCTTCTACCCGAGCCACCGAAACAAGAACCTGGCAAATCTGGGCAGGAGACCCCTGAGTTAATATTC AGCGAGGTTGAAGATGAAAAACCCAAGGAAGTAGATTTGTTACCAGCATCAGAGAGACAAAAACGGATTGCACAACTGCAAGCAAAACTGTTCCAAGCAG CTGCAGAAGGAGCAGTGAGGGTTAAGAGGAGGAGAGGTCCACACAGGGGTGAGGATTTCACCTTGATGCAAGCATTGATCAAGGCAGACTTTTGGCTTAT CTTTTTCTCACTTCTATTGGGATCTGGTTCTGGACTGACAGTGATTGATAACCTTGGTCAGATGAGTCAGTCTCTAGGGTATGATAATACACATATATTT GTGTCTATGATGAGCATTTGGAACTTCCTTGGCCGTGTTGGTGGGGGTTACTTCTCTGAGATTATTGTCAGGGACTATGCTTATCCAAGGCCAGTGGCAA TGGCCATTGCTCAACTTGTTATGGCAGTTGGGCATGTCTTCTTTGCGTTTGGATGGCCCGGGGCGATGTATATTGGTACCCTGTTGATTGGACTCGGCTA TGGAGCTCATTGGGCAATTGTGCCAGCTGCTGCCTCCGAGTTGTTTGGTTTGAAAAAATTCGGGGCTTTGTACAATTTCCTCACTCTGGCAAATCCGGCA GGTTCACTTGTCTTTTCTGGTCTAATTGCAAGCAGCATATATGACCGTGAAGCTGAAAGGCAAGCTCATGGAAACAATTACCACATTCACAATGGAGGGT CATTTTTTTCAGGCATGTTGGTTCTGAATGAACCTTCAAAGTGTGAAGGTTCCATATGCTACTTCCTTACTTCTATGATCATGTCAGGATTTTGCGTTGT TGCTGTTGTCTTGAGCATGATTCTTGTGCATCGGACTAAGATTGTCTACGCAAACCTCTATGGAAAATCACGCAGTTGA
AA sequence Show only first row Show all	>Potri.017G064201.1 pacid=42813777 polypeptide=Potri.017G064201.1.p locus=Potri.017G064201 ID=Potri.017G064201.1.v4.1 annot-version=v4.1 MIGKLADRFSGFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQRQLASLGVAKDLGGSVGFLAGSLSEILPLWGALLVGALQNLVGYGWVWL VVTGRAPVLPLWAMCILIFIGNNGETYINTAALVSCVQNFPKSRGPVVGILKGFAGLNGAILTQIYTMIHSPDHASLIFMVAVGPAMVVIALMFIVRPVG GNRQVRPSDGTSFTFVYTVCLLLAVYLMGVMLLEDLVDLSRIVVVIFTIVLFVLLLIPVVIPVSLSFFLDPRGPAEEPLLPEPPKQEPGKSGQETPELIF SEVEDEKPKEVDLLPASERQKRIAQLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIF VSMMSIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAIAQLVMAVGHVFFAFGWPGAMYIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA GSLVFSGLIASSIYDREAERQAHGNNYHIHNGGSFFSGMLVLNEPSKCEGSICYFLTSMIMSGFCVVAVVLSMILVHRTKIVYANLYGKSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	0	1
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	4.00	0.8788
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.010G141501 [exp]	4.24	0.8567
AT1G62530			Plant protein of unknown funct...		Potri.003G112000 [exp]	4.47	0.8284
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	6.48	0.8654
AT5G05800			unknown protein		Potri.001G299100 [exp]	6.63	0.8678
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	10.24	0.8137
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	11.95	0.8470
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.009G144500 [exp]	12.64	0.7779
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	12.96	0.8082
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	14.00	0.8431

Compare expression of checked genes

Potri.017G064201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.