Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27030 112 / 1e-33 unknown protein AT5G40970 101 / 2e-30 Protein of unknown function (DUF 3339) (.1) AT5G08391 93 / 7e-27 Protein of unknown function (DUF 3339) (.1) AT3G48660 92 / 2e-26 Protein of unknown function (DUF 3339) (.1) AT5G14110 90 / 1e-25 Protein of unknown function (DUF 3339) (.1) AT5G63500 90 / 1e-25 Protein of unknown function (DUF 3339) (.1) AT3G01950 88 / 7e-25 Protein of unknown function (DUF 3339) (.1) AT3G27027 84 / 2e-23 Protein of unknown function (DUF 3339) (.1) AT5G40980 73 / 4e-19 Protein of unknown function (DUF 3339) (.1) AT3G01940 57 / 6e-13 Protein of unknown function (DUF 3339) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328800 [exp] 122 / 2e-38 AT3G27030 79 / 2e-20 unknown protein Potri.015G098200 [exp] 101 / 6e-30 AT3G27030 107 / 7e-31 unknown protein Potri.003G170400 [exp] 96 / 3e-28 AT3G48660 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) Potri.003G170500 [exp] 93 / 5e-27 AT5G08391 112 / 9e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G057900 [exp] 92 / 1e-26 AT5G08391 113 / 6e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G329000 [exp] 89 / 3e-25 AT5G08391 113 / 5e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064301 [exp] 88 / 6e-25 AT5G08391 108 / 5e-33 Protein of unknown function (DUF 3339) (.1) Potri.015G098300 [exp] 85 / 1e-23 AT3G48660 107 / 3e-32 Protein of unknown function (DUF 3339) (.1) Potri.001G328701 [exp] 84 / 8e-23 AT3G27027 115 / 7e-35 Protein of unknown function (DUF 3339) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041551 [exp] 125 / 5e-40 AT3G27030 113 / 3e-34 unknown protein Lus10012542 [exp] 125 / 5e-40 AT3G27030 113 / 3e-34 unknown protein Lus10035199 [exp] 122 / 2e-38 AT3G27030 108 / 4e-32 unknown protein Lus10032030 [exp] 120 / 7e-38 AT3G27030 106 / 2e-31 unknown protein Lus10032029 [exp] 120 / 6e-37 AT3G27027 106 / 4e-30 Protein of unknown function (DUF 3339) (.1) Lus10015769 [exp] 96 / 7e-28 AT3G48660 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10037036 [exp] 94 / 2e-27 AT3G48660 112 / 3e-34 Protein of unknown function (DUF 3339) (.1) Lus10015770 [exp] 91 / 3e-26 AT5G08391 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10037035 [exp] 91 / 3e-26 AT5G08391 111 / 2e-34 Protein of unknown function (DUF 3339) (.1) Lus10011353 [exp] 89 / 2e-25 AT3G48660 122 / 1e-38 Protein of unknown function (DUF 3339) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11820 [poplar] [flax] DUF3339 Protein of unknown function (DUF3339)
Representative CDS sequence Show only first row Show all	>Potri.017G064500.2 pacid=42813141 polypeptide=Potri.017G064500.2.p locus=Potri.017G064500 ID=Potri.017G064500.2.v4.1 annot-version=v4.1 ATGGCAGACTGGGGGCCAGTGTTGATAGGGGTGGTGCTGTTTGTGTTGCTTACACCAGGTCTTTTGTTTCAGTTACCAGGTAACAGCAAACAAGTGGAGT TTGGGAGTTTGAAGACGAATGGCATGGCTGTAGCTGTGCATACTCTCATCTTTTTCGCTGTCTATGCTGTTCTCATCTTGGCTGTTCATGTTCACATCTA TACTGGCTGA
AA sequence Show only first row Show all	>Potri.017G064500.2 pacid=42813141 polypeptide=Potri.017G064500.2.p locus=Potri.017G064500 ID=Potri.017G064500.2.v4.1 annot-version=v4.1 MADWGPVLIGVVLFVLLTPGLLFQLPGNSKQVEFGSLKTNGMAVAVHTLIFFAVYAVLILAVHVHIYTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27030			unknown protein		Potri.017G064500 [exp]	0	1
AT5G40960			Protein of unknown function (D...		Potri.017G064400 [exp]	1.00	0.9508
AT2G35585			unknown protein		Potri.010G101500 [exp]	2.44	0.9469
AT3G27027			Protein of unknown function (D...		Potri.017G064972 [exp]	5.29	0.9323
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	6.48	0.9362
					Potri.005G184450 [exp]	6.48	0.9138
AT5G62350			Plant invertase/pectin methyle...		Potri.012G127500 [exp]	12.68	0.9130
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	14.07	0.9236
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	14.96	0.9240
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	15.81	0.9272
AT5G23100			Protein of unknown function, D...		Potri.012G058300 [exp]	17.54	0.9104

Compare expression of checked genes

Potri.017G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.