Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27470 605 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 566 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 550 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 544 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G08040 531 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 524 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G24570 474 / 2e-167 Protein of unknown function (DUF707) (.1) AT4G12840 271 / 9e-88 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 255 / 7e-81 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 253 / 4e-80 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047200 [exp] 603 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 598 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 520 / 0 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.019G053000 [exp] 266 / 4e-86 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 263 / 1e-84 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 261 / 1e-83 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 253 / 9e-81 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.003G003100 [exp] 249 / 4e-79 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.004G227700 [exp] 242 / 2e-76 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032090 [exp] 602 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 596 / 0 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10022287 [exp] 580 / 0 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 573 / 0 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 565 / 0 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10016095 [exp] 529 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10041316 [exp] 527 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10021463 [exp] 526 / 0 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 528 / 3e-176 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10035229 [exp] 464 / 2e-164 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [poplar] [flax] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Potri.017G065200.8 pacid=42813492 polypeptide=Potri.017G065200.8.p locus=Potri.017G065200 ID=Potri.017G065200.8.v4.1 annot-version=v4.1 ATGCCAGTCCCCATTCGGAGTGGAACTCCCAAAAAACCTAGTGAGATGATGAGGCTTTTCATGACAACTTTTATTGGAATAATTTTTGGCTTCTTCTTAG GAATATCCTTTCCAACGCTGTCCTTATCTAAGATGAATCTCCCATCCAGTTTGTTTCCTTCCATTGATCTTACATATATTGAGGACAAATACTCTGGTCT TTCAAAGCAAGCACTGTTCAATGCTTGGTCTTCTCTAAAGGGTAACAAAGAGGCCTCTCCTTTACTTCCCAGATACAACGAGACTGAGATCTGGGTTCCA ACAAATCCTCGAGGTGCTGAAAGACTACCCCCTGGTATAGTTGCTTCTGAATCAGATTTCTACCTCCGCCGACTTTGGGGTCTGCCTAGTGAGGACCTTA CCATCCAACCTAGATATCTTGTAACCTTTACTGTTGGCTATGATCAGAAAAAAAATATCGATGCGGCAGTTAAAAAGTTCTCCGAGAACTTCACCATTGT GTTGTTTCACTATGATGGACGGACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGAACTGTTCACATCAGTGCTCACAAACAAACAAAGTGGTGGTAT GCCAAACGTTTTCTTCATCCTGACATTGTTGCTCCCTACGATTATATTTTTCTCTGGGATGAGGACCTTGGGGTGGAACATTTTGATGCAGAGAAATACA TTAAACTGGTAAGGAAACATGGTTTGGAGATTTCACAGCCTGGTTTAGATCCAGATAGAGGAACAACATGGGCAATGACAAAGAGAAGAGATGGCATTGA AGTGCACAAGGACACTGAAGAGAGGCCTGGTTGGTGTACAGATCCACATTTGCCTCCATGTGCAGCATTTGTTGAGATCATGGCAACTGTATTTTCTCGA GATGCATGGCGTTGTGTTTGGCACATGATTCAGAATGACTTGGTTCATGGTTGGGGTCTAGATTTTGCTATGAGGAAATGTGTTGAGCCTGCTCATGAGA AAATAGGAGTTGTGGATGCTCAGTGGATCATTCACCAAGGCGTTCCTTCACTCGGGAGCCAGGGGCAAGCACAGAAAGGAAAGGCACCGTGGGAAGGGGT GAGAGAGAGGTGTCGGAAAGAATGGACAATGTTTCAAGATAGAATGACTAATGCAGAAAATGTCTATTATAAGGCAATGGAAATGGATCCTCCCAATTCA ACAGCTCGTTAG
AA sequence Show only first row Show all	>Potri.017G065200.8 pacid=42813492 polypeptide=Potri.017G065200.8.p locus=Potri.017G065200 ID=Potri.017G065200.8.v4.1 annot-version=v4.1 MPVPIRSGTPKKPSEMMRLFMTTFIGIIFGFFLGISFPTLSLSKMNLPSSLFPSIDLTYIEDKYSGLSKQALFNAWSSLKGNKEASPLLPRYNETEIWVP TNPRGAERLPPGIVASESDFYLRRLWGLPSEDLTIQPRYLVTFTVGYDQKKNIDAAVKKFSENFTIVLFHYDGRTTEWDEFEWSKRTVHISAHKQTKWWY AKRFLHPDIVAPYDYIFLWDEDLGVEHFDAEKYIKLVRKHGLEISQPGLDPDRGTTWAMTKRRDGIEVHKDTEERPGWCTDPHLPPCAAFVEIMATVFSR DAWRCVWHMIQNDLVHGWGLDFAMRKCVEPAHEKIGVVDAQWIIHQGVPSLGSQGQAQKGKAPWEGVRERCRKEWTMFQDRMTNAENVYYKAMEMDPPNS TAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	2.00	0.9464
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	2.82	0.9596
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Potri.008G007500 [exp]	4.35	0.9343	Pt-MAN1.1
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	4.47	0.9542
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	5.47	0.9481
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	8.83	0.9392
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	10.39	0.9421
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	11.31	0.9019	Pt-KUP7.2
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.011G088100 [exp]	12.72	0.9411
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	12.84	0.9169

Compare expression of checked genes

Potri.017G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.