Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20000 76 / 6e-17 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 47 / 8e-07 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086300 [exp] 82 / 3e-19 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 77 / 2e-17 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012968 [exp] 76 / 7e-17 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034945 [exp] 48 / 5e-07 AT2G20000 801 / 0.0 HOBBIT, CDC27 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G065600.4 pacid=42814143 polypeptide=Potri.017G065600.4.p locus=Potri.017G065600 ID=Potri.017G065600.4.v4.1 annot-version=v4.1 ATGTGCCATCCCATTTTGAACCTCAAGAAACCTCCAAAAACCAGAAAACCCCTCTTTTTTTTTTTCTCTTTTTTCTCTCTTTCAATCAAAGAAGAAGAAG AGATGGAAGCGATACTAGTAGACTGTGTAAACTGTAAACCACAGTCTTCGCCATTTCATGCATCGAAACGCCATATTCATGTGCGAACGGCTCTGCGCCG AGTTCCCTTTCGAGGAACACAAATGGCTCAATCCCGCTACTTGATTGCGATATCATGCTTTCAAATGGATCTTCTAAATGAAGTTGAAGCTGCATTATGT CCTACTAATGAACCTGGTTTAGAGGTCGTTACAACATCTGACAATCTTCACACTATTGTCATCCTAACTGGAACCTCCAGTTACTAA
AA sequence Show only first row Show all	>Potri.017G065600.4 pacid=42814143 polypeptide=Potri.017G065600.4.p locus=Potri.017G065600 ID=Potri.017G065600.4.v4.1 annot-version=v4.1 MCHPILNLKKPPKTRKPLFFFFSFFSLSIKEEEEMEAILVDCVNCKPQSSPFHASKRHIHVRTALRRVPFRGTQMAQSRYLIAISCFQMDLLNEVEAALC PTNEPGLEVVTTSDNLHTIVILTGTSSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.017G065600 [exp]	0	1
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	1.41	0.9597
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	2.00	0.9598
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088086 [exp]	4.47	0.9441
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	8.36	0.9340
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	9.48	0.9160
AT5G03370			acylphosphatase family (.1)		Potri.016G093000 [exp]	10.24	0.9434
AT3G60590			unknown protein		Potri.014G061000 [exp]	10.39	0.9433
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	10.48	0.9405
					Potri.019G045600 [exp]	10.58	0.9328
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	10.90	0.9427

Compare expression of checked genes

Potri.017G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.