Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14240 215 / 5e-70 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334100 [exp] 108 / 1e-28 AT5G14240 175 / 2e-54 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032064 [exp] 245 / 1e-81 AT5G14240 370 / 7e-131 Thioredoxin superfamily protein (.1) Lus10014596 [exp] 238 / 1e-78 AT5G14240 361 / 4e-127 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF02114 [poplar] [flax] Phosducin Phosducin
Representative CDS sequence Show only first row Show all	>Potri.017G066200.2 pacid=42814599 polypeptide=Potri.017G066200.2.p locus=Potri.017G066200 ID=Potri.017G066200.2.v4.1 annot-version=v4.1 ATGGATCTTGGAAACTTGCCACCAAAACAACCTGCTTTTAAGCCACTGCCTTTCACTCCAGCTCCCGATCAAGAACATTCTATATCTAAAGACAAATTTT TTCTTGATTCCAAAACTGATGAGGAAATCGAACTTGAAGATGATCTCCATCTCTATGACAACCGCTTCCTCCAAGAATACAACTTTTTCGTTCTTGTTTT TTCCCATAAGAAGAGATTGGCAGAAATGAGGAAGTCTATACAGGTTGCGAGGTTTGGATCGGTGGTGCTGATTTCCAGTTCTGATTTTGTGAGGGAAGTG TCACAGATAGGTTCAGATGTTTGGATTGTGGTTCTTTTGTATACGAATGGGTATGCAGAATGTAGTGTGCTTATGAAATGTTTGGAAGAATTGGTAGTGA AATATCCAGGGACAAAGTTTGTTAAGATTGTGTCTACTGATTGTTTACTGAATTATCCAGATTATAATCTTCCTACTTTGCTGGTTTATAATAATGGTGC TGTGATAGCTAATTTTGTTGGATTAAGGAGATTTCGACAGAGAAGCACATCTGAAGGTGTGGCTTTAACTCTCTGCCAATCAGATCATGTACTAAATAGT GGTCATGATGGAATTGATAAATTGAGAGATTTTGTGATTGAAAGACTTTGGAGGAGTCTCATCAAGAAGGTTGTGAGGAACATGAAGACGATGATGGTGG ATCATCAAGTGATTGTACTTTAG
AA sequence Show only first row Show all	>Potri.017G066200.2 pacid=42814599 polypeptide=Potri.017G066200.2.p locus=Potri.017G066200 ID=Potri.017G066200.2.v4.1 annot-version=v4.1 MDLGNLPPKQPAFKPLPFTPAPDQEHSISKDKFFLDSKTDEEIELEDDLHLYDNRFLQEYNFFVLVFSHKKRLAEMRKSIQVARFGSVVLISSSDFVREV SQIGSDVWIVVLLYTNGYAECSVLMKCLEELVVKYPGTKFVKIVSTDCLLNYPDYNLPTLLVYNNGAVIANFVGLRRFRQRSTSEGVALTLCQSDHVLNS GHDGIDKLRDFVIERLWRSLIKKVVRNMKTMMVDHQVIVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14240			Thioredoxin superfamily protei...		Potri.017G066200 [exp]	0	1
					Potri.003G068350 [exp]	1.00	0.8452
					Potri.012G127000 [exp]	1.73	0.7867
AT3G01130			unknown protein		Potri.009G125832 [exp]	4.24	0.7515
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.015G147000 [exp]	4.24	0.8074
AT5G14240			Thioredoxin superfamily protei...		Potri.001G334100 [exp]	4.47	0.7847
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	7.48	0.7025	Pt-DDB1.1
AT5G08040		TOM5	mitochondrial import receptor ...		Potri.015G058500 [exp]	7.74	0.7365
AT1G62350			Pentatricopeptide repeat (PPR)...		Potri.001G275000 [exp]	9.79	0.6974
AT1G09794			Cox19 family protein (CHCH mot...		Potri.003G009800 [exp]	13.03	0.7472
AT5G20810			SAUR-like auxin-responsive pro...		Potri.018G063400 [exp]	19.39	0.7656

Compare expression of checked genes

Potri.017G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.