Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 522 / 0 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT1G20200 65 / 4e-11 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) AT1G75990 65 / 5e-11 PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334200 [exp] 757 / 0 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.004G176600 [exp] 53 / 3e-07 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022337 [exp] 669 / 0 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032065 [exp] 598 / 0 AT5G14250 503 / 7e-177 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 545 / 0 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10014595 [exp] 531 / 0 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10005061 [exp] 72 / 2e-13 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 71 / 5e-13 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.017G066300.2 pacid=42814586 polypeptide=Potri.017G066300.2.p locus=Potri.017G066300 ID=Potri.017G066300.2.v4.1 annot-version=v4.1 ATGGCGACGGCAGAATCGTTGGTGGCGCAAATCCAAGGGCTATCAAGCAACGCGGTGGATTTAGGTTTGTTATCAATTCACTTGAAGAAAGCAGATGAAG TGCTACACAATGAGTCGACTCGGCTTTTGGCTTTTCTTGAACAGCTCGACCCGACTCTTCACTCACTCGGTTATCTTTATTTTTTAGAGGCATGCACTTC TGGGCCGGTTACCAATGAGCAAGCGAGAAGACTGGTTTTGATCCTTTCCAGGTTTCTCACTTGTTGTGTTGCAGACCAGATTCGTTTGGCGTCGGAAAAG TTCATAGCTGTTAGTAAGAGATTCAAAGACCAAGTTTTGATGCTTGAAGTACCAATGCGTGGTGTGGCCCCTTTGCTGGAAGCTGTGAAAAAACTACGCT CATCCTCTGAATATTTGACTGCTTTGCATCCGGATTTTCTTCAACTTTGTTTGTTGGCTAAGTGCTATAAAACTGGTCTTTCCATTCTGGAGGATGATAT TTTTGAGGTTGATCAGCCACGGGACTTTTTTCTCTATTGTTATTATGGGGGGATGATATGTATTGGACAAAAGCATTTTCAGAAAGCACTGGAGCTTCTT CACAATGTCGTGACGGCTCCTATGTCTTCTATAAATGCTATAGCTGTTGAAGCATTCAAAAAATATATATTGGTTTCTCTCATTCAAAATAGACAGTTCT CAACCAGCCTCCCTAAGTACACTTCTTCAGCAGCTCAGAGAAATTTAAAGACCTTGTGTCAGCCCTATATGGAATTAGCAAGTAGTTATAGCAGTGGAAA AGTTTCAGAATTAGAGACATACATTCAGACAAACAGGGAGAAGTTTGAAAGTGACAATAATCATGGACTGGTGAAGCAAGTCGTATCATCCATGTATAAG AGAAACATTCAGAGATTGACCCAAACGTATTTGACTCTTTCCCTCCAAGACATAGCCAAAATTGTGCAACTTAGCAGTCCTAAAGAGGCAGAGATGCATG TGCTTCAAATGATCCAAGATGGTGAGATATATGCAACAATCAACCAGAAAGATGGTATGGTTAGATTCTTAGAGGATCCAGAACAATATAAAAATTGTGA GATGATTGAGCATATCGATTCATCAATTCAGAGGATAATGACATTGTCAAAGAAGCTGACTGCAGTGGATGAACTCTTATCATGTGATCCTTTGTACTTG GCAAAGGCTGGAAGAGAGCGTCAGAGATTTGACTTCGATGATTTTGACCCTGTTCCTCAGAAATTCAACATTTAA
AA sequence Show only first row Show all	>Potri.017G066300.2 pacid=42814586 polypeptide=Potri.017G066300.2.p locus=Potri.017G066300 ID=Potri.017G066300.2.v4.1 annot-version=v4.1 MATAESLVAQIQGLSSNAVDLGLLSIHLKKADEVLHNESTRLLAFLEQLDPTLHSLGYLYFLEACTSGPVTNEQARRLVLILSRFLTCCVADQIRLASEK FIAVSKRFKDQVLMLEVPMRGVAPLLEAVKKLRSSSEYLTALHPDFLQLCLLAKCYKTGLSILEDDIFEVDQPRDFFLYCYYGGMICIGQKHFQKALELL HNVVTAPMSSINAIAVEAFKKYILVSLIQNRQFSTSLPKYTSSAAQRNLKTLCQPYMELASSYSSGKVSELETYIQTNREKFESDNNHGLVKQVVSSMYK RNIQRLTQTYLTLSLQDIAKIVQLSSPKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKNCEMIEHIDSSIQRIMTLSKKLTAVDELLSCDPLYL AKAGRERQRFDFDDFDPVPQKFNI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.017G066300 [exp]	0	1
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	1.41	0.8950
AT1G15780			unknown protein		Potri.003G025200 [exp]	2.23	0.8684
AT1G52343			unknown protein		Potri.003G055200 [exp]	4.47	0.8747
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	4.89	0.8833
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	8.48	0.8518
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	9.00	0.8173	ATPOB1.1
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	9.89	0.8524	Pt-GBP.7
AT4G28830			S-adenosyl-L-methionine-depend...		Potri.018G083800 [exp]	10.00	0.8178
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	10.67	0.8234
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	12.48	0.8601	STGA1.2

Compare expression of checked genes

Potri.017G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.