Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14260 783 / 0 Rubisco methyltransferase family protein (.1.2.3) AT3G07670 117 / 4e-28 Rubisco methyltransferase family protein (.1) AT3G55080 78 / 4e-15 SET domain-containing protein (.1.2) AT1G14030 71 / 5e-13 Rubisco methyltransferase family protein (.1) AT5G17240 54 / 2e-07 SDG40 SET domain group 40 (.1) AT2G18850 49 / 6e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 113 / 1e-26 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 63 / 2e-10 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 61 / 1e-09 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.004G081400 [exp] 56 / 4e-08 AT5G17240 543 / 0.0 SET domain group 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041585 [exp] 776 / 0 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10022333 [exp] 766 / 0 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10012309 [exp] 100 / 2e-22 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 80 / 1e-15 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10036780 [exp] 70 / 2e-12 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 67 / 1e-11 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10021783 [exp] 51 / 2e-06 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10035757 [exp] 47 / 3e-05 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10034599 [exp] 44 / 0.0003 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.017G066500.1 pacid=42814445 polypeptide=Potri.017G066500.1.p locus=Potri.017G066500 ID=Potri.017G066500.1.v4.1 annot-version=v4.1 ATGGAATTCACTTGTTTACACAACAAATGCATTTCACCTTCTCTTACTGTTCTCTCTAGGGTTTCAATTTCATTTTCCAATCTTCCTAAACGCGCCGTTT CATTTCACCGGCGGCGGAGAAATTTGTGCTTTGCAACATTAGTCGATGGGAAACGTACTAGTGAAGTTGTGAGCAAAAGAGGAGGAGAAGAAGAAGACGA ATTTGGGGATTTGAAGTCTTGGATGCATAAAAATGGATTGCCTCCTTGCAAAGTTGTGCTTAAAGAAAGACCTTCTCATGACAAGAAACTTCGACCTATT CATTATGTTGCTGCTAGCGAGGATCTTCAGGCCAGTGATGTGGCGGTTTCGGTGCCCAATTCGCTTGTTGTTACACTCGAGAGGGTTTTGGGAAATGAGA CTCTTGCGGAACTCTTAACCACAAACAAATTATCGGAATTGGCATGCTTGGCCTTATACCTGATGTATGAGAAGAAGCAAGGAAAGAAGTCATTCTGGTA TCCATATATAAGGGAGCTTGATCGTCAGCGAGGTAGGGGTCAGCTGGCTGTGGAATCTCCACTTTTATGGTCTGAGGCTGAATTGGCTTACCTGACTGGT AGCCCAACTAAGGCTGAAGTTCTTGACAGGGCAGATGGAATTAAAAGAGAATATGAGGAGCTAGACACTGTTTGGTTCATGGCTGGTTCTCTGTTTCAGC AATATCCATATGATATACCTACTGAAGCCTTTCCCTTTGAGATTTTTAAACAAGCTTTTGTAGCCATTCAATCCTGTGTGGTGCATTTACAGAAAGTCAG TTTGGCTCGAAGATTTGCTTTGGTTCCTCTTGGACCACCTTTGCTAGCATACAGTAGCAACTGCAAGGCAATGTTAACTGCTGTTGATGGTGCTGTTGAA TTAGTGGTTGATCGACCATACAAGGCTGGGGAGCCCATTGTTGTATGGTGTGGGCCACAGCCAAATTCAAAATTGCTTTTAAACTATGGCTTTGTTGATG AAGATAATCCTTATGACCGAATAGCAGTTGAGGCAGCACTGAACACTGAGGACCCTCAGTATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGGAAATT GTCAGTGCAAGTTTTTCAAGTATACGCTGGAAAGGAAAAAGAAGCCGTGTCAGATATTCTTCCTTATTTGCGATTGGGATATGTATCAGATCCTTCTGAA ATGCAATCTGTAATTTCTTCTCAAGGTCCAGTTTGTCCACTGTTACAGGTAAGCCCTTGTATGGAACAAGCAGTGTTAGATCAGCTTACTGTTTATTTTA GAACGCGCCTTGCTGGCTATTGTACCAGCATAAGTGAAGATGAGTTGATGTTGGCAGATCCTAACTTGAACCCCAAGAAGCGAGTGGCTACTCAGCTTGT TAGATTGGAAAAGAAAATGCTGAAGGCATGCTTGCAGGCTACAGTTGATTTGATAAACCAGTTACCTGATCACACCATGCCTCCATGCCCAGCTCCTTAT GCCCCTTTATTGAAATGA
AA sequence Show only first row Show all	>Potri.017G066500.1 pacid=42814445 polypeptide=Potri.017G066500.1.p locus=Potri.017G066500 ID=Potri.017G066500.1.v4.1 annot-version=v4.1 MEFTCLHNKCISPSLTVLSRVSISFSNLPKRAVSFHRRRRNLCFATLVDGKRTSEVVSKRGGEEEDEFGDLKSWMHKNGLPPCKVVLKERPSHDKKLRPI HYVAASEDLQASDVAVSVPNSLVVTLERVLGNETLAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQLAVESPLLWSEAELAYLTG SPTKAEVLDRADGIKREYEELDTVWFMAGSLFQQYPYDIPTEAFPFEIFKQAFVAIQSCVVHLQKVSLARRFALVPLGPPLLAYSSNCKAMLTAVDGAVE LVVDRPYKAGEPIVVWCGPQPNSKLLLNYGFVDEDNPYDRIAVEAALNTEDPQYQDKRMVAQRNGKLSVQVFQVYAGKEKEAVSDILPYLRLGYVSDPSE MQSVISSQGPVCPLLQVSPCMEQAVLDQLTVYFRTRLAGYCTSISEDELMLADPNLNPKKRVATQLVRLEKKMLKACLQATVDLINQLPDHTMPPCPAPY APLLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14260			Rubisco methyltransferase fami...		Potri.017G066500 [exp]	0	1
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	16.37	0.9251
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	17.74	0.9076
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Potri.015G132100 [exp]	18.97	0.9090
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Potri.006G246500 [exp]	19.54	0.9198
AT2G32500			Stress responsive alpha-beta b...		Potri.014G154900 [exp]	36.18	0.9094
AT1G20830		MCD1	multiple chloroplast division ...		Potri.002G006300 [exp]	43.95	0.8840
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	50.51	0.9068	Pt-GUN5.1
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.015G075600 [exp]	63.74	0.8944
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G117200 [exp]	69.41	0.8943
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.001G244800 [exp]	72.62	0.8961

Compare expression of checked genes

Potri.017G066500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.