Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CNGC16.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48010 965 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT5G14870 933 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT4G30360 851 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 816 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 724 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G23980 696 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 696 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G15990 687 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT1G19780 678 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 673 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108200 [exp] 854 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.018G097600 [exp] 849 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 801 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.009G010700 [exp] 730 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 694 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.012G002200 [exp] 672 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 670 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 664 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.002G170000 [exp] 652 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002363 [exp] 1089 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10042132 [exp] 1067 / 0 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039415 [exp] 879 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 877 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10015510 [exp] 845 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 838 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 832 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 796 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 780 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 741 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.017G067000.1 pacid=42814004 polypeptide=Potri.017G067000.1.p locus=Potri.017G067000 ID=Potri.017G067000.1.v4.1 annot-version=v4.1 ATGAATAACTTCCGCTCATACACCTCATCACATTTCCGCCGTTTACCCAAATCCTTGTCTATCCGACGCAAAGTTCCCTGGTGGGACCAAATTCATGACC CTGGAAGTGAAATTGTTAGCAAATGGAACCACATTTTCCTTGTCGCGTGCATGATTGCAATGTTTCTTGACCCTCTTTATTTATACCTTCCCATTATCGG TGGCGATGCCTGCATGAAGATTGACATTGCCCTAGGCGTCTGGGTTACCTTCGCTCGCACCTTCACGGACTTGTTTTTTTTCTTACACATTTTCATGAAG TTTAGGACAGCTTTTGTTGCACCAAGCTCTCGCGTTTTTGGTAGAGGAGAGCTTGTTATGGACCCTAGAGCCATTGCCATACGCTACCTGAAATCGAACT TTGTTGTTGATCTTGCTGCTGCCCTTCCTCTCCCTCAGATTGTGATTTGGTTCATAATTACATCAGTGCTGAAAAATCCCACAGCTGCTCATGCTAACCA CACTGTTTCTCTAATAGTTCTCATCCAATACATTCCTCGATTTTTTGTTATGATACCTCTGAATCGACGGATTGTTAAGACTACTGGTGTTATAGCCAAG ACTGCGTGGTCCGGGGCAGCTTATAATCTCCTTCTCTATGTACTTGCTAGCCATGTTTTAGGAGCTATATGGTATCTGGCATCAATTCAGAGGCAGCATC ACTGCTGGAACATACAATGTAAAAATGAGAGGAACCGCACACCAGCTTGCATCTCTCTATTTCTTGACTGTAGTGCTAAGGATAACCCTGCACGACAAGC TTGGCTTACAACCACTAATCTGCTCACAAATTGTGATGCCCAAAATGATGAAAATTTTCAGTTTGGGATGTTTGCCGAAGCCTTTACAAATCATGTTGCT GAAGCATCTTTCATAGATAAATATTTCTATTGTCTTTGGTGGGGCTTAAGAAACTTAAGTTCGTATGGACAAAATTTGATGACAAGTACCTATGAAGGTG AAACACTATTCAGCATTGGCATCTGTATTATGGGTCTAGTTCTGTTTGCTCATCTCATAGGCAATATGCAGACATATATGCAATCCGCGTCTGCTAGATT GGAAGAATGGAGGATTAGGCGAAGAGATACAGAGGAATGGATGAGGCACCGTCAATTACCTCCAGAGTTGCAAGAACGTGTTCGCCGTTTTGTTCAATAC AAATGGTTAGCTACGAGAGGTGTAGACGAAGAAAGCATCTTGAAGTCCTTACCTATGGATATCCGACGTCAGATTCAACGGCATCTTTGTCTGGCCCTTG TTCGACGCGTCCCATTTTTTGCACAAATGGATGATCAACTGTTAGATGCAATATGTGAACGTCTTGTCTCATCTTTGAACACTAAAGACACCTTCATAGT CCGGGAGGGTGATCCAGTAAATGAGATGCTTTTCATCATTAGAGGACAGCTAGAAAGTTCCACAACAAATGGGGGAAGGTCAGGTTTTTTCAACTCAATT ACACTCAGGGCTGGTGACTTTTGTGGGGAGGAATTGTTGACATGGGCTCTGATGCCAACCTCTCGTCTGAATTTACCTGTATCCACTCGAACTGTCAAGG CTCTCTCTGAAGTTGAGGCCTTTGCACTTAGAGCGGTTGACCTAAAGTTTGTTGCAAAGCAATTTAAACGGTTGCATAGCAAGAAATTGCAGCATGCTTT CAGGTATTACTCTCATCAGTGGAGGACGTGGGGAGCTTGCTATATACAATCTGCATGGAGGCGTTATACAAGGAGGAAACTACAAATGGAATTGGCTAGG CAAGAAAGCTTATTTTATTCTCAAGTTATGGAAGGTGAGGTTGAATATTATTACAGTGATGAAGGAGGAGATGAAAGACCATTAGTGGATCATTCAAACA ATGGTTCGCATCTTGGAGCAACCATGCTTGCTTCAAAATTTGCTGCAAATACAAGGAGAGGAGTTGGCCATCAAAAGCTTCCTCGGCCGGATGATTCCAC CTTAGAAATGCCCAAGTTTTTTAAACCAGAGGAACCTGATTTCTATGCAGAGCATGAAGATAGTTGA
AA sequence Show only first row Show all	>Potri.017G067000.1 pacid=42814004 polypeptide=Potri.017G067000.1.p locus=Potri.017G067000 ID=Potri.017G067000.1.v4.1 annot-version=v4.1 MNNFRSYTSSHFRRLPKSLSIRRKVPWWDQIHDPGSEIVSKWNHIFLVACMIAMFLDPLYLYLPIIGGDACMKIDIALGVWVTFARTFTDLFFFLHIFMK FRTAFVAPSSRVFGRGELVMDPRAIAIRYLKSNFVVDLAAALPLPQIVIWFIITSVLKNPTAAHANHTVSLIVLIQYIPRFFVMIPLNRRIVKTTGVIAK TAWSGAAYNLLLYVLASHVLGAIWYLASIQRQHHCWNIQCKNERNRTPACISLFLDCSAKDNPARQAWLTTTNLLTNCDAQNDENFQFGMFAEAFTNHVA EASFIDKYFYCLWWGLRNLSSYGQNLMTSTYEGETLFSIGICIMGLVLFAHLIGNMQTYMQSASARLEEWRIRRRDTEEWMRHRQLPPELQERVRRFVQY KWLATRGVDEESILKSLPMDIRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVSSLNTKDTFIVREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSI TLRAGDFCGEELLTWALMPTSRLNLPVSTRTVKALSEVEAFALRAVDLKFVAKQFKRLHSKKLQHAFRYYSHQWRTWGACYIQSAWRRYTRRKLQMELAR QESLFYSQVMEGEVEYYYSDEGGDERPLVDHSNNGSHLGATMLASKFAANTRRGVGHQKLPRPDDSTLEMPKFFKPEEPDFYAEHEDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Potri.017G067000 [exp]	0	1	CNGC16.1
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	20.63	0.5862
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.001G139500 [exp]	25.92	0.5456
AT3G59310			Eukaryotic protein of unknown ...		Potri.014G151800 [exp]	39.59	0.5216
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	39.79	0.5065	Pt-PT2.7,PtrPht1-6
					Potri.003G056450 [exp]	43.80	0.5213
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.001G096320 [exp]	59.51	0.5163
AT5G66815			unknown protein		Potri.014G034500 [exp]	63.96	0.5164
					Potri.003G056850 [exp]	70.86	0.4914
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	82.91	0.5157
AT1G32583			unknown protein		Potri.006G017600 [exp]	83.13	0.5022

Compare expression of checked genes

Potri.017G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.