Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYN2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40840 218 / 6e-60 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G16270 140 / 7e-34 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 120 / 9e-28 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G05490 74 / 2e-13 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178600 [exp] 140 / 7e-34 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 139 / 1e-33 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 117 / 8e-27 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022338 [exp] 267 / 1e-76 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10041587 [exp] 259 / 4e-74 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10026862 [exp] 134 / 6e-32 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 125 / 7e-29 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10023028 [exp] 115 / 3e-26 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 112 / 2e-25 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10020233 [exp] 87 / 2e-17 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [poplar] [flax] Kleisin PF04824 [poplar] [flax] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein CL0157 [poplar] [flax] PF04825 [poplar] [flax] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Potri.017G067400.1 pacid=42812880 polypeptide=Potri.017G067400.1.p locus=Potri.017G067400 ID=Potri.017G067400.1.v4.1 annot-version=v4.1 ATGTTTTACTCACACTGCCTTCTGTCAAGGAAAGGTCCATTAGGTTCCATTTGGGTTGCTGCTTACTACTTCAAAAGGCTTAAAAAAGCACAAGTCACTT CCACTGATATCTCCTCCTCCGTTGATAAAATTTTGCAAGATGGGTTTGATGTTGTTACATATAGAGTACTGGCCTACCTTCTTCTTGGTGTAGTCAGAAT ATACTCCAAAAAAGTTGAATATCTGTTTGATGACTGCAACAAAGTTCTTCTTAACGTCAAGGACTTTGTGCTCTGTAATAAAGATGGGATACTTGTGGAA ACCTTGCAAGCACCTTACTTCTCTATTACTCTACCAGAAAGATTTGAACTTGATGCTTTTGATCTGGAGATTATTGAAGATACTATTGGAGGCAATGTGA TGCCCCACGAAGAAATTACACTTAAAGATGGCATGTGGAAAACTAGGGGTGTAGCGAAATATTCTCTAAACCAGGATCACTGTGAGGAATTTGCTGCCTG TGGAGATACTTGGTCTTCAGGTTACAGTATGAATGAAGATGTTTTGTCATCTCATTTGGTGGATGTTATGGAGCAAGGCACATTGTGTAGTGTAAGCACT CTACAAGCAAGCATGGAGAAGCTTCAAGGCAGTATGTTCTCTCATCATGAATGTGAGGACCTTGAAATGTTTCTTGAGGTTGAGGAGGAGCCTACAAACA CTAGAAAATCATTTGTTGAAGATCATCTAACTGATGAGGAGGAATCAAAGGTTCCAGATAAGATAGGTTCGGATGAAACACATGCAGGAATGAGTGTGCT GAAGCTTTGTGATGACAGTGTCTGTCAGGAAGCATCTCTGAACCTTGAAATGTTTGGTGGGGTAGAGGAAGAACCTGGAAAGCTTGCTAAGCTATATCAC CAATCTGAGGAGCAGCAAAAAGAGGTTCCTGGTGTGGAACAATCAGAAAATGAAACGCAAAGTGTTTTAAATGATGGTAATGTGTCTGATGTAGAAGTAT CCATAGAGAAGCTTCTAGAGAGTAGATTTTTTCAAGAAGAATGTATGGATGCTAATACATTTCTTGCGGTTGAGGAGCCTCCAGAACATGCTAGACCATT TAATGAAGAGCATCAGAGCAATGCAGGGAACACAAGTTTACCAGAAACAACAACATTGGGAAAAAGAAAGCAGCAACTTGTCTCAGAAGATCACCCATTG TATATAAAACTTGACGCTACTCCTCAATCCAAGTTCAAAGATGTTTCAGGAGCTAACACACCAGAGTTTATGGTTATTTCTACACCGGCTGCTAAGGAGC ATGCTCGTGCTCTCAGGAAAAGAAAGTGTTTCTTTGATGATGTGGTAGTGTTTCCTAATAACGTAATTAAGGAATGCATAGAAAACACAGGTGACTTGGT GTCCAAACGTAGAAAGCTTCCTCATACTGCTTTTGCTGTCTGGAAAGCCTGTCGATTTTCCAATCTTGACAAGTGTTTCCTGGAGCCTCTGATTCCTTGT GCTTCACTAGAGCTTGGATCCCTCTTTCGCACAAAGAAATTACAAATTCCAGAAACAGTCAAGAGTGTTGGTGGATCAGTTGAAATAGAGGAACCTTCCA AAAAGTTGGATGCTTCAGAGTCTCAAAACATTGGAGGGTCAGTGGAAAATACAGAGCATCTGGAAAAGTTAAATGTTTCAGGATCTCCTCTTGTTGGCAG ATTAGATGAAACTGTGGAAACTGCAGAAAATATGTTTATTCAAGAATCAGCTGGGATCTTGGAATCTCCACAAAAGTTTGTGTCTGAATGTCCTACTAGT GCTAGATTGGTTGAGACCATGGAACTTTCGGACATGTCAGAATCTTATACTGTTGGAAGATCAGTTGAAACTGTGGAGACTCTAGAGAAGTCAAATGTGT CTGGATCTCCTTCTGCTAGTAGATTTGCTGGAACTTTGGAACGTCCTGGAAAGTTAGATATAGCAGAATCTCCCACTGCTGGTGGCTCTTTAGAGCAAAT GGCAATCGCTCCAGAAACACCTATTCAGTGCACAACATCGGTGAGGTCTTTTGAGAGCCCTGAGAGACCTGATATTTATGATGCAGATGGACTAAGGTCC AAAACTGTTGAGAAAGAAATTTGCCGTAGCCTGGATCAAGAACTTGATTTCAATCTGCTTAATGAGGACATGAATACATCTGGAGATAACCAGGAGCATT ATGGGTGGTCAGAAAGAACCAGAGTGGCAGTGAAATGCTTGCATGCAAGTTTTCTGATACAGAAGAAAAGAAGACAGGAGGAAGTTCTAAATTTATTGCG AATTTTGGAAGGAAGAACCAAGAGAGAGAGTGCCAGGCTCTTCTATGAGATACTGGTATTGAAAAGTAAAGGATATGTGGACGTGAAGGAAGAAAATTTA TACGGTGACATTCTCATCTGGAAAACCCCTCAATGGGACCAAGCTTGTAGATCGTAA
AA sequence Show only first row Show all	>Potri.017G067400.1 pacid=42812880 polypeptide=Potri.017G067400.1.p locus=Potri.017G067400 ID=Potri.017G067400.1.v4.1 annot-version=v4.1 MFYSHCLLSRKGPLGSIWVAAYYFKRLKKAQVTSTDISSSVDKILQDGFDVVTYRVLAYLLLGVVRIYSKKVEYLFDDCNKVLLNVKDFVLCNKDGILVE TLQAPYFSITLPERFELDAFDLEIIEDTIGGNVMPHEEITLKDGMWKTRGVAKYSLNQDHCEEFAACGDTWSSGYSMNEDVLSSHLVDVMEQGTLCSVST LQASMEKLQGSMFSHHECEDLEMFLEVEEEPTNTRKSFVEDHLTDEEESKVPDKIGSDETHAGMSVLKLCDDSVCQEASLNLEMFGGVEEEPGKLAKLYH QSEEQQKEVPGVEQSENETQSVLNDGNVSDVEVSIEKLLESRFFQEECMDANTFLAVEEPPEHARPFNEEHQSNAGNTSLPETTTLGKRKQQLVSEDHPL YIKLDATPQSKFKDVSGANTPEFMVISTPAAKEHARALRKRKCFFDDVVVFPNNVIKECIENTGDLVSKRRKLPHTAFAVWKACRFSNLDKCFLEPLIPC ASLELGSLFRTKKLQIPETVKSVGGSVEIEEPSKKLDASESQNIGGSVENTEHLEKLNVSGSPLVGRLDETVETAENMFIQESAGILESPQKFVSECPTS ARLVETMELSDMSESYTVGRSVETVETLEKSNVSGSPSASRFAGTLERPGKLDIAESPTAGGSLEQMAIAPETPIQCTTSVRSFESPERPDIYDADGLRS KTVEKEICRSLDQELDFNLLNEDMNTSGDNQEHYGWSERTRVAVKCLHASFLIQKKRRQEEVLNLLRILEGRTKRESARLFYEILVLKSKGYVDVKEENL YGDILIWKTPQWDQACRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	0	1	SYN2.1
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	2.82	0.9007
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	7.93	0.9009
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	8.30	0.8763
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	11.66	0.8935
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	12.36	0.8662
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	13.41	0.8736
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	16.21	0.8057	SDG944,SDG37.1
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	16.34	0.8499
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	16.94	0.8703
					Potri.011G012201 [exp]	18.84	0.8543

Compare expression of checked genes

Potri.017G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.