Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14100 346 / 1e-120 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT4G33460 84 / 1e-18 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT1G65410 72 / 3e-14 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT5G46540 70 / 2e-13 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G18050 69 / 6e-13 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT3G47740 68 / 1e-12 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT1G70610 67 / 3e-12 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT4G25750 66 / 4e-12 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G61740 66 / 4e-12 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47780 66 / 7e-12 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062800 [exp] 77 / 2e-16 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.002G212701 [exp] 76 / 1e-15 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.001G354900 [exp] 73 / 2e-14 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.014G137000 [exp] 71 / 5e-14 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 69 / 2e-13 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.003G094400 [exp] 67 / 3e-12 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.010G003000 [exp] 67 / 4e-12 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G139600 [exp] 65 / 1e-11 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 65 / 1e-11 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035195 [exp] 371 / 2e-130 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10032025 [exp] 329 / 1e-113 AT5G14100 303 / 1e-103 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10022035 [exp] 74 / 8e-17 AT5G14100 66 / 9e-15 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10036857 [exp] 76 / 3e-15 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10006209 [exp] 74 / 1e-14 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10004583 [exp] 74 / 2e-14 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10026992 [exp] 73 / 2e-14 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10004571 [exp] 72 / 1e-13 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10000827 [exp] 70 / 1e-13 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10020188 [exp] 70 / 2e-13 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.017G067804.1 pacid=42813625 polypeptide=Potri.017G067804.1.p locus=Potri.017G067804 ID=Potri.017G067804.1.v4.1 annot-version=v4.1 ATGGCAACTTCCTCTTTATCAACAGTTCAGTCCTCAATTAATCACAAGCCACTTCGATTATCACCACAACGAGTCTCACCTAAACTCGATTTTATTAGAA TTCCACAAAATCACAAAATCTACTGCGGCTACTCTTGCTTTGAGGTTAAGGATGTTAGCTATAGACCTCCAGGGACTGAGCTTAATCTCCTAAATAAAGT TACCTTTTCGCTTCCAGAGAGAAGTTTTGGCTTGATTTTTGGTCAAAGTGGGAGTGGAAAAACTACTCTTTTGCAGCTTCTTTCCGGGATAAGCAAACCA ACGTCAGGTTCGATTTGTGTTCAAAGATATGGGAATGATGGAAATCCAAACCAATTGCCTGAACAGCTATCTCCTGAAAAAGTTGGTATTGTCTTTCAAT TTCCCGAGAGGTACTTTGTGGCTGACACTATTGCTGATGAAGTTACATTTGGGTGGCCAAGGCGAAAGAGCAGCGTTCAATTAAGGGAGCATCTTGCTTT GAATCTGCAAAGAGCTGTAAATTGGGTTGGATTGAATGGGATCTCATTGGATAAAGATCCTCACTCGCTAAGTGGTGGATATAAACGTCGGCTTGCCCTG GCTATTCAATTGGTTGAAGTCCCAGATCTGTTGATATTGGATGAGCCTCTTGCTGGTCTAGATTGGAAGGCACGTGCAGATGTTGTAAAGCTTTTGAAGC ACTTGAAGAAGGAATTGACTATCCTTGTTGTCAGTCATGATCTCAAAGAGTTAGCAGCTCTAGTTGATCATTCCTGGAGGATGGAAATGGGCGGATTTCT GAGGGAAGAGCTTCTTCCAGTGTAA
AA sequence Show only first row Show all	>Potri.017G067804.1 pacid=42813625 polypeptide=Potri.017G067804.1.p locus=Potri.017G067804 ID=Potri.017G067804.1.v4.1 annot-version=v4.1 MATSSLSTVQSSINHKPLRLSPQRVSPKLDFIRIPQNHKIYCGYSCFEVKDVSYRPPGTELNLLNKVTFSLPERSFGLIFGQSGSGKTTLLQLLSGISKP TSGSICVQRYGNDGNPNQLPEQLSPEKVGIVFQFPERYFVADTIADEVTFGWPRRKSSVQLREHLALNLQRAVNWVGLNGISLDKDPHSLSGGYKRRLAL AIQLVEVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKELAALVDHSWRMEMGGFLREELLPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Potri.017G067804 [exp]	0	1
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	9.94	0.9531
AT1G12244			Polynucleotidyl transferase, r...		Potri.004G225600 [exp]	19.44	0.9403
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	19.49	0.9526
AT4G22830			unknown protein		Potri.001G114800 [exp]	23.13	0.9509
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	28.00	0.9482
AT4G27390			unknown protein		Potri.001G405800 [exp]	29.39	0.9376
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	31.78	0.9466
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.014G039600 [exp]	32.24	0.9477	RPS9.1
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	32.95	0.9496
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	39.66	0.9462	Pt-RPS9.2

Compare expression of checked genes

Potri.017G067804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.