Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 433 / 3e-150 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 422 / 3e-145 Protein kinase superfamily protein (.1.2) AT5G02800 400 / 4e-138 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G20650 394 / 9e-136 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G07070 390 / 9e-134 Protein kinase superfamily protein (.1) AT3G26940 388 / 7e-133 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G24790 380 / 2e-130 Protein kinase superfamily protein (.1) AT3G20530 376 / 1e-128 Protein kinase superfamily protein (.1) AT1G76370 372 / 2e-127 Protein kinase superfamily protein (.1) AT1G07870 374 / 3e-127 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166900 [exp] 449 / 3e-156 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 442 / 1e-153 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 426 / 2e-146 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 424 / 6e-146 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 408 / 1e-141 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 408 / 2e-141 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 400 / 5e-138 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 392 / 5e-135 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 384 / 6e-132 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015756 [exp] 445 / 9e-155 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10032010 [exp] 439 / 2e-152 AT5G13160 399 / 4e-136 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10035178 [exp] 431 / 3e-149 AT5G13160 393 / 6e-134 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 427 / 1e-146 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 425 / 3e-146 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 402 / 7e-139 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 397 / 1e-136 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 395 / 4e-136 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 392 / 1e-134 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 388 / 1e-133 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G067900.1 pacid=42813425 polypeptide=Potri.017G067900.1.p locus=Potri.017G067900 ID=Potri.017G067900.1.v4.1 annot-version=v4.1 ATGGGTTTTTGCCCTTGTTTCGGGTTTTCTAAAAGCAAGAAGGTGAAAAGCGATCATATCAAGAAACAGCCATCTTATGAACAAAGATTGGGAACAGTAT CAAAAAAGAGTGTTGATTCAAGATTTAAATCAGCTGTTGTAAAAGATGGTCCCAGTGCTCATTTCTCTGCGACATTCACCTATGAAGAACTTTCATTTGC AACAAACAATTTTAGGTCTGAATCTTTAATTGGAAGAGGTGGATTTGGTGCTGTATTTAAAGGAAAATTAGAAAGCACTGGTCAGCAGGTTGTAGCTGTT AAACAGCTAGATCCATCAGGTATCCAAGGCGACAAGGAGTTTCTGGTGGAGGTTCTCATGCTCTCCCTACTGCATCACCCTAACCTTGTCAACTTGATTG GTTTTTGTGCCGAAGGAGACCATCGTCTTCTTGTCTATGAATACATGCCTTTGGGATCCTTGGAAGATCACCTTTTTGATGTGACACCGCATATGGAGCC TCTTGACTGGAATACAAGAATGAAGATAGCAGCGGGTGCAGCCAGAGGATTGGATTCTCTGCATTCTGCAAATCCCCCCGTCATATACAGGGACTTGAAA GCGTCTAACATATTATTGGAGGATGGTTTTAACCCAAAACTCTCGGATTTTGGACTTGCTAAATTTGGCCCAGTTGGTGATAAGTCCTATGTCTCCACCA GGGTCATGGGTACCTATGGTTACTGTGCTCCTGAATATGCATCATCTGGAAGGTTGACCATAAAGACTGATATCTACAGTTATGGAATTGTTTTGTTAGA GCTCATCACTGGACATAGAGCACTGGACGAGGTTAACGGTCATCAAGAATATCTTGTTAACTGGGCACTTCCCTTGATGAAAGACCACAACTTTTCAAGA TTAGCAGATCCAATGCTTAAAGGCAAGTACTCAATGTCTGTCTTAAAGAAGGTTATAGAAGTGGCATCTATGTGTCTCGGTGAAAATGCCAATTCACGCC CTTCCTCGAGTGAATTGGTGCAAGCCATGGATTACTTGTTCTCTCGTAAAAATGAATCAAAGAAGGTAAAGAATGACTGTGCCAAATGGCCAGAGATTGA CCTCTCCCCAAGTCACTCAAAAATGATATTAGACAAGGATTTAGATCGGGACCGTGCTGTGGCAGAGGCCAAGATGTGGGGAGTGAAATGGAGAGAAAGG CGAGAACAAATTCAGCGAAGTATTTCTGATGAAGACAATAGGTAG
AA sequence Show only first row Show all	>Potri.017G067900.1 pacid=42813425 polypeptide=Potri.017G067900.1.p locus=Potri.017G067900 ID=Potri.017G067900.1.v4.1 annot-version=v4.1 MGFCPCFGFSKSKKVKSDHIKKQPSYEQRLGTVSKKSVDSRFKSAVVKDGPSAHFSATFTYEELSFATNNFRSESLIGRGGFGAVFKGKLESTGQQVVAV KQLDPSGIQGDKEFLVEVLMLSLLHHPNLVNLIGFCAEGDHRLLVYEYMPLGSLEDHLFDVTPHMEPLDWNTRMKIAAGAARGLDSLHSANPPVIYRDLK ASNILLEDGFNPKLSDFGLAKFGPVGDKSYVSTRVMGTYGYCAPEYASSGRLTIKTDIYSYGIVLLELITGHRALDEVNGHQEYLVNWALPLMKDHNFSR LADPMLKGKYSMSVLKKVIEVASMCLGENANSRPSSSELVQAMDYLFSRKNESKKVKNDCAKWPEIDLSPSHSKMILDKDLDRDRAVAEAKMWGVKWRER REQIQRSISDEDNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.017G067900 [exp]	0	1
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G281000 [exp]	6.40	0.6918
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	37.56	0.5859
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254366 [exp]	47.49	0.6028
AT1G05380			Acyl-CoA N-acyltransferase wit...		Potri.001G153200 [exp]	54.77	0.6215
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	62.06	0.6302
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.008G172500 [exp]	62.16	0.6148
AT5G28780			PIF1 helicase (.1)		Potri.001G185950 [exp]	71.04	0.5809
AT2G01260			Protein of unknown function (D...		Potri.019G119100 [exp]	97.97	0.6068
					Potri.018G060100 [exp]	98.92	0.6049
AT1G32700			PLATZ transcription factor fam...		Potri.005G130300 [exp]	100.09	0.6048

Compare expression of checked genes

Potri.017G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.